Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O04
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   7.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = -1

Query: 215 ISEYYLRDHYSTISKWDW 162
           +SE+ +  H   + +W+W
Sbjct: 612 LSEFVINPHQQHLDQWNW 629


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 233 IISNRKISEYYLRDHYSTISKWDWTIPA 150
           ++ N  I +Y +RD   T  +WD +I A
Sbjct: 397 MVDNTTIYKYDVRDGCRTPFQWDNSINA 424


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 189 LFNNKQMGLDYSRPVTNSHVT 127
           L NN     D+S  V N+HV+
Sbjct: 201 LNNNDATPTDFSMGVKNNHVS 221


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 312 GSGRWGSAL 338
           GSG WGS +
Sbjct: 11  GSGNWGSTI 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,675
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)