Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O03
         (68 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   3.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    19   4.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    19   4.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    19   5.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 56  LLFVNILIMYK*LFDM 9
           +LF +ILI +K  FDM
Sbjct: 665 MLFKDILIYHKDEFDM 680


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 56  LLFVNILIMYK*LFDM 9
           +LF +ILI +K  FDM
Sbjct: 665 MLFKDILIYHKDEFDM 680


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 10  ISNNYLYIISILTNN 54
           +SNNY+  IS   NN
Sbjct: 85  LSNNYISNISNYNNN 99


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 10  ISNNYLYIISILTNN 54
           +SNNY+  IS   NN
Sbjct: 323 LSNNYISNISNYNNN 337


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 66  SNLSVICQYTNN 31
           S+LS  C Y+NN
Sbjct: 305 SSLSNSCNYSNN 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449
Number of Sequences: 438
Number of extensions: 221
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 4
effective length of database: 144,591
effective search space used:  2602638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)