Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O02
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    30   0.22 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   0.66 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.1  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 25   NQVNCNYLIFNYFHHI**WTCFNNPR--NRVNLFKKENHNY 141
            N  + N ++FN F  +  +   NN R  N++N+F++ NHN+
Sbjct: 1045 NTADMNTIVFNTFVWLQLFNEINNRRLDNKLNIFERINHNF 1085


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 242  INKLNSFLFVLFETKC--CFAQSLGLCNKYQCY 150
            IN+ + FL  +++ K   C   ++GLCN Y C+
Sbjct: 1024 INQSSEFLSPIWKKKTYVCLCTTIGLCNIYLCF 1056


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 109 VNLFKKENHNYHKQ*H*YLLQSPKLCAKQHLVSNNTNRNEFNLFITNFIFVI 264
           +N+FKK+   Y++    +L QS +   KQ L++   NR  + L I +   ++
Sbjct: 827 LNIFKKQTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIV 878


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 111  NTVTGIIKTSPLLNMMKVIKN*VITIYLV 25
            N   G+ +   +LN+ K IK   +TIYL+
Sbjct: 1096 NVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +3

Query: 291 YHPYYTYKSLFFIYFSFNFILQYTRIYYYI 380
           ++ +Y +  L +++F F   + Y  + YY+
Sbjct: 136 HNRFYAHVFLSWLFFGFTIFIIYRELRYYV 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,463
Number of Sequences: 5004
Number of extensions: 33259
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)