Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O02
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 240 YNEFYFCYTIQLKCFSLYHPYYTYKSLFFIYF-SFNFILQYTRIYYY 377
           Y + + C+  Q  CFS+           FIYF +F+F +QY   Y Y
Sbjct: 289 YKKMFLCHQFQSVCFSI-----------FIYFMTFSFFVQYLPSYLY 324


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 285 SLYHPYYTYKSLFFIYFSFNFILQYTRIYYY 377
           +LYH ++ Y  +FF+  S  +   Y  IY +
Sbjct: 3   TLYHVFHIYWPVFFVICSILYFTMYILIYNF 33


>Z68116-11|CAA92176.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 77  NGLVLIIPVTVLIYLXXXXXXXTNSNIDIYYKVPNFVRNNT 199
           NGLV+I+P+T L+         T S+  +Y++   F++  T
Sbjct: 192 NGLVVIVPITCLLLRRKILKLLTASSDALYFQNRVFLQGLT 232


>Z68114-12|CAA92163.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.8 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 77  NGLVLIIPVTVLIYLXXXXXXXTNSNIDIYYKVPNFVRNNT 199
           NGLV+I+P+T L+         T S+  +Y++   F++  T
Sbjct: 192 NGLVVIVPITCLLLRRKILKLLTASSDALYFQNRVFLQGLT 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,053
Number of Sequences: 27780
Number of extensions: 180653
Number of successful extensions: 427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)