Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O01
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    30   0.31 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.2  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    26   5.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   8.7  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   8.7  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 491 NKITNTVKFPKSNPLLAPQNPALAKRFKYRRSKSYNVASNHA 616
           N  T+  KF   N + A +NP      KYR S    V+SNHA
Sbjct: 4   NHNTSVPKFSSFNSVKAKKNPITKSNKKYRSSHD-QVSSNHA 44


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  SKLSRALRTGAPQTEPSGLVQPE*SVRAVFSRRLDLLSHIV 201
           S LS ALR G P    S +       R++F +++D L  +V
Sbjct: 151 SFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLV 191


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  SPNSLELYEQELHKLNPLVSYNRSKVFVPSFLEDWIFYHISFKN 208
           S  +LE YE+ +  L     Y  S   V SFL   IF H+ FK+
Sbjct: 163 STKNLEKYEKIVLALLNFDIYVISLPSVESFLTPLIFQHVFFKS 206


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 177 TGSSITYRLKT-PATVTLNKEISSPKRQTFVPPPV 278
           T SS +Y  +T PA+ T+N EI SP    F P P+
Sbjct: 285 TPSSPSYSRQTGPASETINDEIDSP--NFFFPTPL 317


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 38  PTGKFMTHGNGATSPNSLELYEQELHKLNPLVSYNRSKVFVPSF 169
           P  KF+        P+SL    +  H     VS  R+ V +PSF
Sbjct: 168 PLNKFLAGAENVDIPHSLRPVPRREHSSQFQVSEKRTLVRLPSF 211


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 285 KLLSHINLTPWI*SIVY 335
           ++L+HIN+ PW  S+ Y
Sbjct: 228 EILNHINVAPWALSLFY 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,029
Number of Sequences: 5004
Number of extensions: 55307
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)