Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O01
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 30 1.3
03_01_0506 + 3816676-3817971 29 2.2
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 29 2.2
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 29 2.9
04_03_0994 - 21514495-21515610 29 3.9
02_03_0203 + 16365262-16365644,16365774-16365869,16365991-163662... 28 5.1
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 5.1
11_06_0321 - 22341267-22342565 27 8.9
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 165 LFSKTGSSITYRLKTPATVTLNKEISSPKRQTFVPPPVFAKLLSHINLTPW 317
+FS+ S+ ++ TP TL K+ISSPK + + P + + + ++ W
Sbjct: 423 IFSRIVESVWWQALTPHMQTLVKDISSPKAGSLLGPALGDQQQGNFSIHLW 473
>03_01_0506 + 3816676-3817971
Length = 431
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 83 NSLELYEQELHKLNPLVSYNRSKVFVPSFLEDWIFY 190
+S E+Y+ E H PL S NR++ D FY
Sbjct: 249 SSAEMYDSETHSWTPLPSMNRARKMCSGVFMDGKFY 284
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 171 SKTGSSITYRLKTPATVTLNKEISSPKRQ---TFVPPPV 278
S T SS ++R+K PA E SSP+++ T PPPV
Sbjct: 27 STTSSSSSWRIKRPARFRCCAEPSSPEQENPSTPAPPPV 65
>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 408 LQIIYLEMYKKVLHEECDIFLICNVH 485
L+I Y + K+ +EECD F++C VH
Sbjct: 1028 LKIQYGQNKGKLYNEECDRFMLCMVH 1053
>04_03_0994 - 21514495-21515610
Length = 371
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 390 VHFFSLQTLPIFKHGSTINILLTISMALNLYDLVVLRILVEER 262
+HF +LP K G + +L + A N Y + LR++ E++
Sbjct: 259 LHFIYTDSLPEMKGGDAVAMLPDLVAAANRYKMERLRLVCEDK 301
>02_03_0203 +
16365262-16365644,16365774-16365869,16365991-16366297,
16366417-16366664,16367201-16367438
Length = 423
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 327 LTISMALNLYDLVVLRILVEERTFVSLVMRFLC*ASPLPV 208
+T+ + LN Y V+ ++ FV+++ LC SPL +
Sbjct: 268 VTLGLLLNTYAKAVVNVIQPVMPFVAMLCTSLCIGSPLAI 307
>01_04_0010 - 15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 408 LQIIYLEMYKKVLHEECDIFLICNVH 485
L+I Y + K +EECD F++C VH
Sbjct: 987 LKIQYGQNKGKFYNEECDRFMLCMVH 1012
>11_06_0321 - 22341267-22342565
Length = 432
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 65 NGATSPNSLELYEQELHKLNPLVSYNRSKVFVPSFLEDWIFYHISFK 205
NG S S ELY+ E L S NR++ F D FY I K
Sbjct: 245 NGTLS--SAELYDSEAKTWTTLPSMNRARKMCSGFFMDGKFYVIGGK 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,002
Number of Sequences: 37544
Number of extensions: 316569
Number of successful extensions: 776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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