Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_O01
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 30 1.1
U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 4.6
Z81047-3|CAB02829.1| 389|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical ... 28 6.1
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 28 6.1
AL117203-1|CAB55099.1| 115|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Frame = -2
Query: 528 FDFGNFTVFVI---LFFNEHCK*EKYHILHEALFYTFLSI*FVIKFMYGVHFFSLQTLPI 358
F F NF + V+ ++ K LH + F+ F+ V FF L +PI
Sbjct: 194 FAFLNFVISVLTPFIYIPIMIDINKNQHLHSQQHIYLQNYIFIQSFL--VLFFKLIPVPI 251
Query: 357 FKHGSTINILLTISMALNLYDLVVLRILVE 268
F T +IL ++M ++L D++ ++++
Sbjct: 252 FIWSKTTSILTEMAMIISLGDVITTPLIIQ 281
>U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical
protein T18H9.7a protein.
Length = 803
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 491 NKITNTVKFPKSNPLLAPQNPALAKRFKYRRSKSYNVASNH 613
N+I FP+ N ++ L+KR +Y RS V NH
Sbjct: 37 NRILLDCVFPEVNSIIVTAKLPLSKRNRYLRSNEIKVTPNH 77
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 256 CLFGDEISLLSVTVAGVFKRYVIEDPVFEKRRHEHFT 146
C +GD I+ + V GVF R +E+P F R + F+
Sbjct: 1998 CAYGDSING-ELVVGGVFVRLYVENPGFNVRHPKLFS 2033
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 256 CLFGDEISLLSVTVAGVFKRYVIEDPVFEKRRHEHFT 146
C +GD I+ + V GVF R +E+P F R + F+
Sbjct: 2006 CAYGDSING-ELVVGGVFVRLYVENPGFNVRHPKLFS 2041
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 256 CLFGDEISLLSVTVAGVFKRYVIEDPVFEKRRHEHFT 146
C +GD I+ + V GVF R +E+P F R + F+
Sbjct: 2006 CAYGDSING-ELVVGGVFVRLYVENPGFNVRHPKLFS 2041
>Z81047-3|CAB02829.1| 389|Caenorhabditis elegans Hypothetical
protein C41G6.5 protein.
Length = 389
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 326 NSILIVDPCLNIGSVWSEKKWTPYI 400
N+ILI+ L SVW E WT +I
Sbjct: 226 NNILILRKYLQFSSVWIESTWTYWI 250
>Z77657-7|CAH60768.1| 320|Caenorhabditis elegans Hypothetical
protein F08H9.12 protein.
Length = 320
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 390 VHFFSLQTLPIFKHGSTINILLTISMALNLYDLVVLRILVE 268
V FF L TLP F N T ++++L D+V ++++
Sbjct: 233 VMFFKLVTLPYFLSNLEYNCASTSMLSMSLADVVTTPLIIQ 273
>AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical
protein Y42G9A.6b protein.
Length = 547
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 542 EPTGGLTSETLQYSLFCFLMNIANKKNITFFM 447
EPT GL S L Y + C L +A +N+T +
Sbjct: 95 EPTSGLDS-FLAYQVVCVLKKLAETRNMTILL 125
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 542 EPTGGLTSETLQYSLFCFLMNIANKKNITFFM 447
EPT GL S L Y + C L +A +N+T +
Sbjct: 232 EPTSGLDS-FLAYQVVCVLKKLAETRNMTILL 262
>AL117203-1|CAB55099.1| 115|Caenorhabditis elegans Hypothetical
protein Y48C3A.1 protein.
Length = 115
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 408 IKFMYGVHFFSLQTLPIFKHGSTINILLTISMALN 304
I F Y HFF + IF+ IN +L I++ N
Sbjct: 22 ISFQYNKHFFVYNLILIFRKFPKINAILKITVDRN 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,294
Number of Sequences: 27780
Number of extensions: 300581
Number of successful extensions: 703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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