Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_O01
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   9.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   9.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 53  MTHGNGATSPNSLELYEQELHKLNPLV 133
           + HG  A +P++  LY+  L   N LV
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYNKLV 44


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 53  MTHGNGATSPNSLELYEQELHKLNPLV 133
           + HG  A +P++  LY+  L   N LV
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYNKLV 44


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 82  WRGSTVTMCHKFPRRVQNF 26
           WRG+   +   FP +  NF
Sbjct: 73  WRGNLANVIRYFPTQALNF 91


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 82  WRGSTVTMCHKFPRRVQNF 26
           WRG+   +   FP +  NF
Sbjct: 73  WRGNLANVIRYFPTQALNF 91


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 189 ITYRLKTPATVTLNKEISSPKRQT 260
           + + L+TP  V + + + +P R+T
Sbjct: 222 VLFALQTPDNVLIKELVVTPNRET 245


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2
          protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 26 KILNPTGKFMTHGNGATSPNSL 91
          +I+ P   +  HGN ++ PN L
Sbjct: 28 RIIYPGTLWCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 26 KILNPTGKFMTHGNGATSPNSL 91
          +I+ P   +  HGN ++ PN L
Sbjct: 33 RIIYPGTLWCGHGNKSSGPNEL 54


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 26 KILNPTGKFMTHGNGATSPNSL 91
          +I+ P   +  HGN ++ PN L
Sbjct: 33 RIIYPGTLWCGHGNKSSGPNEL 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,286
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)