Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N24
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 77 3e-15
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 31 0.17
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 28 1.2
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.1
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 27 2.1
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 26 3.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 5.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.0
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 5.0
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 8.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.7
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 8.7
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 76.6 bits (180), Expect = 3e-15
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 8/205 (3%)
Frame = +2
Query: 17 QDAEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENE-NLSVSLVEHGLAST 193
+ EPF EE+L +K LQHD + I ++ G F+G ++V ++ N ++ L+ GLA
Sbjct: 537 EKGEPFAEESLSLAKS-LLQHDAQVEILSVDNNGCFLGDIYVNHDTNFALKLLSQGLAWC 595
Query: 194 HHTAEAS--EYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVK---YEKVV 358
A S +Y++ T E A + K+G+W YV EK+ + TVK Y +V
Sbjct: 596 QGYASQSNVQYSQYHDT-EAAAKEQKVGMWHDYVPPEKKAASTEKESENTVKEPIYLDIV 654
Query: 359 ITVVTSEAHFYVQKVDLG-SKLEALMEKIHQEFKTNAPLPGSYVPSRGGLCAARYTADNQ 535
++ + + F Q + G +LE LM + K+ P S + G AA DN
Sbjct: 655 LSDIAEDGKFSFQIIGTGIQQLETLMSDLGSLKKSFKP---SEKINVGMNVAAISALDNA 711
Query: 536 WYRARIEKI-TEDTVIHVFYIDYGN 607
YR R+ + E+ V DYG+
Sbjct: 712 MYRGRVLRCDRENQAADVLLYDYGS 736
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +2
Query: 20 DAEPFGEEALQFSKEKCLQHDVIISIADMNKAG-NFIGWLWVENENLSVSLVEHGL---A 187
+ EP G+EA QF + LQ +V+I + D+ G +F+G + N++ L+ GL A
Sbjct: 221 EQEPCGDEAKQFVVTRLLQRNVVIELLDLAPNGVSFLGNVLHPAGNIATFLLSSGLGRVA 280
Query: 188 STHHTAEASEYARAFKTAEENAIKNKIGIWK 280
H +A E ++ +T E A +++GIWK
Sbjct: 281 DNHISALGPETMQSLRTIERKAKISRLGIWK 311
Score = 29.9 bits (64), Expect = 0.30
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +2
Query: 26 EPFGEEALQFSKEKCLQHDVIIS-IADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHT 202
EPF EA +FS+ + +S + + + G + +L+ SL+ GLA
Sbjct: 50 EPFAFEAQEFSRRLVVGRPASVSTLYVIPTSKREYGRIRTSEFDLAESLLREGLAKLRPE 109
Query: 203 AEASE------YARAFKTAEENAIKNKIGIW 277
A +E Y + + A+++A + K+GIW
Sbjct: 110 ATRNEGTSENSYFVSLEEAQDHAQQYKLGIW 140
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 EVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKL-EALMEKIHQEFKTNAPL 472
EVQK ++R + EK + T FY +D K+ +A +E + KT A +
Sbjct: 147 EVQKAIEDRKEEDEKSITDTTTGMKDFYASMLDRQEKIHQAAVEGVQNSKKTGAEI 202
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = +2
Query: 134 LWVENENLSVSLVEHGLASTHHTAEASEYARAFKTAEEN-------AIKNKIGIWKTYVE 292
L + N N+SV+L A H T +A +AR + A N I + + + Y+
Sbjct: 155 LALRNPNISVALYAFASAKRHLTDDAVAFARQARVALTNITTTDSLLILVLLAVTQLYI- 213
Query: 293 EEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYV 394
+ +I++ A ++ VK++ ++T + E Y+
Sbjct: 214 PKSDIQLFNFAVDQVVKFDASLMTSPSDEIITYL 247
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 317 KTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALMEKIHQEFKTNAPL 472
K A+N+T+ YE+ + S Q DL + E L ++I + N L
Sbjct: 297 KQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSL 348
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 146 NENLSVSLVEHGLASTHHTAEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEI 307
NEN S + H H T A A K ++ENA + +GI +++V+ +K +
Sbjct: 65 NEN---SYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSV 115
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 78 CCRHFSLLNC-NASSPNGSASWIG 10
CC+H + +NC N ++P +A+ IG
Sbjct: 207 CCKHLAHVNCINCNTPWANATVIG 230
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 449 PGVSSPSTLLVYCRGQLSAHRSALLTSQR 363
P S+P TL++ CR Q RSAL+ S +
Sbjct: 674 PWTSTPETLVLLCR-QFELTRSALVQSHQ 701
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 165 ETDKFSFSTHSQPMKLPALFISAILMITSCCRH 67
E+D + F T S ++P + + L++ S C++
Sbjct: 480 ESDMYGFLTWSMGSQIPGIITAFTLLLASLCKN 512
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 5.0
Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 2/154 (1%)
Frame = +2
Query: 41 EALQFSKEK-CLQHDVIISIADMNKA-GNFIGWLWVENENLSVSLVEHGLASTHHTAEAS 214
EAL ++K C +++ ++ K G +IGW + + + +
Sbjct: 687 EALSLREDKDCYTMSLLLDVSSTGKIRGTWIGWAVIRPRKA------YTMKEADELLQTD 740
Query: 215 EYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYV 394
R F T + +G T V + + + + ++ + S A +
Sbjct: 741 ARLRLFHTVSSRLRTHHLG---TDVPLSRYCRLVRRWDEESCSFDPNETNLFISSAVEVL 797
Query: 395 QKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSR 496
++ L + A+ + QEF+ NA L +PSR
Sbjct: 798 RETLLDAANRAVASHLRQEFRENAFLRTQRLPSR 831
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 8.7
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +2
Query: 230 FKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDL 409
+KT EN K I ++ KE E+QK Q + + EK+ I EA ++++
Sbjct: 53 YKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSI-----EARKQQLEIEI 107
Query: 410 GSKLEALMEKIHQEFKT 460
++L EK+ KT
Sbjct: 108 RNQLLQYAEKLRIVVKT 124
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 119 NFIGWLWVENENLSVSLVE 175
N I WLW++N ++S VE
Sbjct: 434 NSICWLWIKNPTHAISRVE 452
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 35 GEEALQFSKEKCLQHDVIISIADMNKAGNFI 127
G QF + CL + +S+ MNKA FI
Sbjct: 103 GSGKSQFCMQLCLMVQLPLSLGGMNKAAVFI 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,021
Number of Sequences: 5004
Number of extensions: 54113
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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