Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N24
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 110 7e-25
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 67 1e-11
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641... 29 2.2
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 29 2.9
01_05_0271 + 20276965-20278674 29 2.9
04_04_0881 + 29055724-29059197 28 5.0
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 28 6.7
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 27 8.8
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 27 8.8
>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 110 bits (265), Expect = 7e-25
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 7/201 (3%)
Frame = +2
Query: 26 EPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLAS-THHT 202
EP+ EA+ + + LQ DV I + +++ G F+G LW N++ L+E GLA +
Sbjct: 625 EPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFG 684
Query: 203 AEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEA 382
+ A AE++A + K+ IW+ YVE E E+ ++++ + KVV+T V
Sbjct: 685 LDRIPDANVLMRAEQSAKQQKLKIWENYVEGE-EVSNGSASESKQKEILKVVVTEVLGGG 743
Query: 383 HFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRGGLCAARYTADNQWYRARIEK- 559
FYVQ V ++ ++ +++ +AP+ G++ P +G + A+++ADN W RA I
Sbjct: 744 KFYVQTVG-DHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIVNG 802
Query: 560 -----ITEDTVIHVFYIDYGN 607
++D VFYIDYGN
Sbjct: 803 PRGAVSSQDDKFEVFYIDYGN 823
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +2
Query: 26 EPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLAS-THHT 202
EP+ +EA+ + + LQ +V I I +++ G F+G LW N N++ L+E GLA +
Sbjct: 631 EPYSDEAITMMRRRILQRNVEIEINTVDRTGTFLGSLWESNINVASVLLEAGLAKISSFA 690
Query: 203 AEASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEA 382
+ A+ E+ A + K+ +W+ Y +E+EV + + KV++T V
Sbjct: 691 VDKMPDAQVLLKTEKIAKQKKLKVWENY----EEVEVSNVSLYDNKETLKVIVTEVLGAG 746
Query: 383 HFYVQ 397
FYVQ
Sbjct: 747 MFYVQ 751
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 482 YVPSRGGLCAARYTADNQWYRARIE---KITEDTVIHVFYIDYGN 607
+ P +G + A + DN W RA I + E VFYIDYGN
Sbjct: 832 FTPMKGEMVLALFRCDNSWNRAMIIGECQGVEGPEFEVFYIDYGN 876
>02_05_0907 -
32663544-32663623,32663673-32663863,32664065-32664162,
32664406-32664519,32664589-32664646,32664778-32664867,
32665414-32665505,32665898-32666008,32666120-32666374,
32666512-32666577,32666725-32666853
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 260 NKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALMEK 439
N +G W Y+E +EIE Q V+++ +V+ + + + LGSKL +L K
Sbjct: 213 NSLGTWG-YIEAIREIEHQIQISG-DVQFDDIVVACGSGGT---IAGLALGSKLSSLKAK 267
Query: 440 IH 445
+H
Sbjct: 268 VH 269
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 523 GISRRAQTPPARHVRSGQR-RVGFELLVYLLHQRF*FTAEVNFLHIE 386
G+S +AQ P R++ GQR RV F L Y Q N L IE
Sbjct: 483 GLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDIE 529
>01_05_0271 + 20276965-20278674
Length = 569
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +3
Query: 438 RYTRSSKPTRRCPDR---TC--RAGGVCARRDIPRIINGI 542
R +RSS T PD C RA C+R D+ R++NGI
Sbjct: 105 RRSRSSAATATAPDAHTFACVLRACADCSRPDVARVVNGI 144
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 105 ISAILMITSCCR--HFSLLNCNASSPNGSASWIGPSC 1
I A+LM S R + ++ NASSP+ SW G +C
Sbjct: 37 IDALLMFRSGLRDPYAAMSGWNASSPSAPCSWRGVAC 73
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 120 LPALFISAILMITSCCRHFSLLNCNASSPNGSASW 16
L AL I L++T HF L N +P GS W
Sbjct: 8 LAALVILLALLLTLVLSHFLPLLLNPKAPKGSFGW 42
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 512 ARYTADNQWYRARIEKITEDTVIHVFYIDYGN 607
A ++ D +WY A IE++TE+ +V + +GN
Sbjct: 104 AVWSEDGEWYNATIEELTENG-YYVSFEGWGN 134
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 83 VIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHTAEASEY 220
++ + + K +F+GW E +++ V+ L+S H E +Y
Sbjct: 241 LVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRLEEDEDY 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,000
Number of Sequences: 37544
Number of extensions: 408377
Number of successful extensions: 1273
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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