Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N24
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 149 2e-36
U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.030
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 36 0.030
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.091
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.091
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 0.85
U53340-1|AAA96206.1| 658|Caenorhabditis elegans Hypothetical pr... 30 1.1
U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical p... 29 2.6
AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical... 29 2.6
AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein. 29 3.4
AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineag... 29 3.4
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81088-6|CAB03123.1| 272|Caenorhabditis elegans Hypothetical pr... 28 4.5
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 4.5
Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical pr... 28 6.0
U51995-6|AAA96074.1| 430|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 149 bits (360), Expect = 2e-36
Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 11/206 (5%)
Frame = +2
Query: 23 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENE-------NLSVSLVEHG 181
AEPF +EA F+++ LQH+V + + +K GNF+G+L+V + NLS +LVE+G
Sbjct: 575 AEPFADEAAAFTRKLVLQHEVQLEVESTDKNGNFVGYLYVSPDGNTSRAINLSEALVENG 634
Query: 182 LASTHHTAEASEYARAFKTAEENAIKNKIGIWKTYVEEE--KEIEVQKT-AQNRTVKYEK 352
LAS H TAE S + A +AE A K K IW + EE+ +E+EVQ+ R + +
Sbjct: 635 LASLHFTAERSGHYNALLSAENKAKKAKKNIWANFTEEQHQEEVEVQQADTSERKQNFRQ 694
Query: 353 VVITVVTSEA-HFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRGGLCAARYTAD 529
V +T + A F Q ++ G K+E + ++ Q + PL GSY RG LC A+++ D
Sbjct: 695 VAVTDIAPGALRFSAQNIEDGPKIEKMTTEMRQALAEHPPLAGSYTTKRGDLCVAKFSQD 754
Query: 530 NQWYRARIEKITEDTVIHVFYIDYGN 607
QWYR ++E + + YIDYGN
Sbjct: 755 GQWYRCKVESVRAGQA-EIVYIDYGN 779
>U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical
protein C56G2.1b protein.
Length = 409
Score = 35.5 bits (78), Expect = 0.030
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +2
Query: 350 KVVITVVTSEAHFYVQKVDLGS--KLEALMEKIHQEFKTNAPLPGSYVPSRGGL-CAARY 520
+V ++ + S +HF++Q+ S L L + + + LP +P + GL CAA
Sbjct: 183 EVAVSSIISASHFFIQQPTHPSFASLRHLDMYMGSLYGEQSNLPELPIPCQNGLLCAA-- 240
Query: 521 TADNQWYRA-RIEKITEDTVIHVFYIDYG 604
N W+RA ++ E + V ++DYG
Sbjct: 241 PVGNAWFRAVTVQYFDETDEVFVKFVDYG 269
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 35.5 bits (78), Expect = 0.030
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +2
Query: 350 KVVITVVTSEAHFYVQKVDLGS--KLEALMEKIHQEFKTNAPLPGSYVPSRGGL-CAARY 520
+V ++ + S +HF++Q+ S L L + + + LP +P + GL CAA
Sbjct: 641 EVAVSSIISASHFFIQQPTHPSFASLRHLDMYMGSLYGEQSNLPELPIPCQNGLLCAA-- 698
Query: 521 TADNQWYRA-RIEKITEDTVIHVFYIDYG 604
N W+RA ++ E + V ++DYG
Sbjct: 699 PVGNAWFRAVTVQYFDETDEVFVKFVDYG 727
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 33.9 bits (74), Expect = 0.091
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHT 202
AE GEE LQ KEK + + + D ++ G+ +NE+++ + + A
Sbjct: 15087 AENKGEETLQEVKEKLKKGKAVEKVQDESRRGSL--QASSDNESVTTTSEKRSEAELEKN 15144
Query: 203 AEASEYARAFKT---AEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVT 373
+E S ++ A + A K K E++K++ V+K A+ VK +K I +
Sbjct: 15145 SEKSAEKKSTSADLEAADKAETEKSETGKETTEKKKKV-VKKVAKKGLVKADKSKIELTA 15203
Query: 374 -SEAHFYVQKVDLGSKLE 424
E Q + G +E
Sbjct: 15204 GKEGEISAQVAETGVSVE 15221
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 33.9 bits (74), Expect = 0.091
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 23 AEPFGEEALQFSKEKCLQHDVIISIADMNKAGNFIGWLWVENENLSVSLVEHGLASTHHT 202
AE GEE LQ KEK + + + D ++ G+ +NE+++ + + A
Sbjct: 15087 AENKGEETLQEVKEKLKKGKAVEKVQDESRRGSL--QASSDNESVTTTSEKRSEAELEKN 15144
Query: 203 AEASEYARAFKT---AEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVT 373
+E S ++ A + A K K E++K++ V+K A+ VK +K I +
Sbjct: 15145 SEKSAEKKSTSADLEAADKAETEKSETGKETTEKKKKV-VKKVAKKGLVKADKSKIELTA 15203
Query: 374 -SEAHFYVQKVDLGSKLE 424
E Q + G +E
Sbjct: 15204 GKEGEISAQVAETGVSVE 15221
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 30.7 bits (66), Expect = 0.85
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 263 KIGIWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAH-----FYVQKVDLGSKLEA 427
K+ I KT++++E+ QK A+ T ++E + E H V+K ++ K+ A
Sbjct: 352 KLAIPKTFMKKEETPSFQKVAKRPTRQWEPKKQESLEQEEHKETVKEEVKKEEVKEKVPA 411
Query: 428 LMEKIHQEFK-TNAPLPGSYVP 490
+E+ H E K AP+ Y P
Sbjct: 412 KVERKHWEPKVAPAPVIDGYAP 433
>U53340-1|AAA96206.1| 658|Caenorhabditis elegans Hypothetical
protein F02E8.4 protein.
Length = 658
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -3
Query: 264 LFLMAFSSAVLKARAYSDASAVWWVEASPCSTNETDKFSFSTHSQPMKLPALFISAILMI 85
L + + S V +A+ ++S++ +V A+ CST+ F MK+ A I+ +
Sbjct: 239 LNISSVSEEVQNVQAFQESSSLPFVHANQCSTSSAKNFDLFPVDPRMKIDARIINNHSVD 298
Query: 84 TSCCRHFSLLNC 49
C LNC
Sbjct: 299 FGCLER-DRLNC 309
>U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical
protein W06B4.3 protein.
Length = 962
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 272 IWKTYVEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSKLEALME 436
IWKTY++ + + + A+ R + V+ +A FY+Q+ + + E L +
Sbjct: 345 IWKTYLDRGEYQKALQIARTRVAIEPDALEMVLRKQADFYIQEKNFTAAAEILAQ 399
>U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical
protein C18A3.3 protein.
Length = 340
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 271 HMENLRRRGEGNRSTKNRSE*NREVRESGHYRCDVRSALLCAES 402
HM+ +R+R G + K R E R +RE + V+ +L A++
Sbjct: 171 HMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAKN 214
>AL110477-11|CAB54323.1| 489|Caenorhabditis elegans Hypothetical
protein Y113G7B.16 protein.
Length = 489
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 197 HTAEASEYARAFKTAEENAIKNKIGIWKTYVEE--EKEIEVQKTAQNRTVKYEKVVITVV 370
+ AEA++ + E A++ +I V + K E K A++ ++EK + +
Sbjct: 108 YLAEAAQILQRLAQYEIPALRKQISKMDQSVTDAIRKHSEYGKQAEDGRKQFEKEISRMQ 167
Query: 371 TSEAHFYVQKVDLGSKLEALMEKIHQEFK 457
H + ++L + L A EKI E +
Sbjct: 168 LKGVHLRKELLELAADLPAFYEKITAEIR 196
>AY145133-1|AAN52916.1| 435|Caenorhabditis elegans TCL-2 protein.
Length = 435
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 192 PTTLPRRPSMPELSKRPRRMP 254
P PR P PEL+ PRR+P
Sbjct: 398 PPPAPRAPQAPELASGPRRIP 418
>AC024761-7|AAF59468.3| 435|Caenorhabditis elegans T cell lineage
defect protein 2 protein.
Length = 435
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 192 PTTLPRRPSMPELSKRPRRMP 254
P PR P PEL+ PRR+P
Sbjct: 398 PPPAPRAPQAPELASGPRRIP 418
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 35 GEEALQFSKEKCLQHDVIISIADMNKAGN 121
G+E + + EK Q DVII I D++ GN
Sbjct: 490 GQETIDYLTEKRDQLDVIIHIGDISDVGN 518
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 35 GEEALQFSKEKCLQHDVIISIADMNKAGN 121
G+E + + EK Q DVII I D++ GN
Sbjct: 490 GQETIDYLTEKRDQLDVIIHIGDISDVGN 518
>Z81088-6|CAB03123.1| 272|Caenorhabditis elegans Hypothetical
protein F53F1.6 protein.
Length = 272
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 416 KLEALMEKIHQEFKTNAPLPGSYVPSRGGLCAARYTADNQWY 541
+L++ +KI++E K LP +Y+P G Y Q+Y
Sbjct: 18 ELDSTKKKINEEKKHWGDLPLTYMPISNGTMTREYAETEQFY 59
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 221 ARAFKTAEENAIKNKIGIWKTYVEEEKEIE-VQKTAQNRTVKYEK 352
++ FK + +K++ ++ T +EE+ E+E + +NRTVK+ K
Sbjct: 2176 SKHFKVLDRAIVKSRYELY-TIMEEDDEVELIVNMLENRTVKHGK 2219
>Z81136-4|CAI46577.1| 738|Caenorhabditis elegans Hypothetical
protein W02B8.6 protein.
Length = 738
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +2
Query: 206 EASEYARAFKTAEENAIKNKIGIWKTYVEEEKEIEVQKTAQNRTVKYEKV 355
+ + +A+ E + +KN++ K Y +++ ++KT Q +K +K+
Sbjct: 100 DITSHAKCLVDLESDGLKNRLLKRKKYFDKKTRSSIEKTPQKTVMKPDKL 149
>U51995-6|AAA96074.1| 430|Caenorhabditis elegans Hypothetical
protein F07G6.3 protein.
Length = 430
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 432 WRRYTRSSKPTRRCPDRTCRAG-GVC 506
W+R+ R S+P + P +CR+ GVC
Sbjct: 372 WQRFVRESRPRKDPPWSSCRSEVGVC 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,871
Number of Sequences: 27780
Number of extensions: 319764
Number of successful extensions: 990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -