Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N24
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.44 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 598 INVKYVDDCILGDLFDSRPIPLIIRGI 518
           + +KY++ C+L  L    P+PLI R I
Sbjct: 395 LEMKYLERCLLETLRMYPPVPLIAREI 421


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 19/78 (24%), Positives = 29/78 (37%)
 Frame = +2

Query: 374 SEAHFYVQKVDLGSKLEALMEKIHQEFKTNAPLPGSYVPSRGGLCAARYTADNQWYRARI 553
           +E HF   +  L  ++E     +H E   NA    S   SR         A+ +      
Sbjct: 724 TEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKSEHC 783

Query: 554 EKITEDTVIHVFYIDYGN 607
           EK  ++     F+ D GN
Sbjct: 784 EK-GKEYYAASFHTDIGN 800



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 505 QTPPARHVRSGQRRV 461
           Q PP  H RS ++RV
Sbjct: 611 QEPPQWHTRSTEKRV 625


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 326 QNRTVKYEKVVITVVTSEAHFYVQKVDL 409
           +N+TVKY   +  ++  +  F +  +D+
Sbjct: 100 RNKTVKYSARMHAIIACQMEFQLYPMDI 127


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 287 VEEEKEIEVQKTAQNRTVKYEKVVITVVTSEAHFYVQKVDLGSK 418
           V++E+E E +K  +   ++YE  +    T E    +++    SK
Sbjct: 45  VQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSK 88


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 131 WLWVENENLS 160
           W W +NEN S
Sbjct: 108 WTWAKNENCS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,859
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)