Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N23
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552...    29   1.5  
12_02_0346 - 17776871-17781445                                         29   2.0  
10_08_0386 + 17448803-17449067,17449704-17449708                       28   3.4  
03_06_0094 + 31610866-31611288                                         28   3.4  
06_03_0588 + 22567820-22570802,22570917-22571269                       28   4.5  
12_02_0343 - 17748882-17753396                                         27   6.0  
03_02_0661 + 10247128-10247895                                         27   7.9  

>05_04_0163 +
           18652306-18652839,18653785-18653853,18655139-18655270,
           18655424-18655477,18655570-18655614,18656166-18656305,
           18657107-18657232,18657325-18657361
          Length = 378

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 458 PFPRS*FLGLPTFCF---LTPPAAAASGFSATLGCGG 357
           PFPRS  L LP       L PPA  AS  S  +G GG
Sbjct: 36  PFPRSLPLNLPVLRLARPLLPPAPLASSGSGGIGIGG 72


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 TLRKHILYHGQFDVLSSGCEFSVIIHNYVLRITNTKMC 235
           +LR   L    +DV    C FS ++H   LRI +++MC
Sbjct: 669 SLRVIFLSGASYDVGDVLCNFSELVHLRYLRIKDSRMC 706


>10_08_0386 + 17448803-17449067,17449704-17449708
          Length = 89

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 371 RWRRNPTQPQPAVSRS 418
           RWR  PT P PAV+R+
Sbjct: 34  RWRAGPTSPPPAVARN 49


>03_06_0094 + 31610866-31611288
          Length = 140

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 395 PQPAVSRSRKLANRGIMTSE 454
           P+PAV+R R++A+RG+  S+
Sbjct: 109 PKPAVARKRRVASRGVRASK 128


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 154 LPV-I*NVFSQSIHKNIGHNHLSGG 83
           +PV I  +FS S H ++ HN+LSGG
Sbjct: 577 IPVHIFKIFSLSEHLDLSHNYLSGG 601


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 122 TLRKHILYHGQFDVLSSGCEFSVIIHNYVLRITNTKMC 235
           +LR   L    +DV    C FS ++H   LRI ++ MC
Sbjct: 670 SLRVIFLSGASYDVGDVLCNFSELVHLRYLRIEDSGMC 707


>03_02_0661 + 10247128-10247895
          Length = 255

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 308 PRRCDECQSRLNY---RLWLHHS-PRWRRNPTQPQPAVSRSRKL 427
           PR  D+C++RL+Y   RL    S  +    P  P P+V R R L
Sbjct: 68  PRTVDQCKNRLDYLKKRLKAERSRSKGAPAPPPPPPSVDRLRAL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,855
Number of Sequences: 37544
Number of extensions: 276812
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)