Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N23
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.14 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.14 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.97 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   5.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   5.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 19  ICFNSYYTITFCINVIGVEKIILQTSDCVQYFCVYF 126
           +CF SY    FCI   G+    L  S  V  FC+ F
Sbjct: 422 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 19  ICFNSYYTITFCINVIGVEKIILQTSDCVQYFCVYF 126
           +CF SY    FCI   G+    L  S  V  FC+ F
Sbjct: 475 VCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLF 510


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 335 RLNYRLWLHHSPRWRRNPTQPQPAVSRSR 421
           R+N+     H PR++R  T  +P  + SR
Sbjct: 146 RINFTKLKRHHPRYKRPRTTFEPRATDSR 174


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 57  KCYRS*ENYPPDK*LCPIFL 116
           KC     N+P D+  CP+ L
Sbjct: 161 KCPMELRNFPMDRQSCPLIL 180


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +2

Query: 59  ML*ELRKLSSRQVIVSNIFVYTLRKHILYHGQFDVLSSGCEFSVII 196
           M+ EL  LS    +    F      H++++    ++ +GC  + +I
Sbjct: 193 MIAELETLSVEPKVSPMTFCRVFPFHLMFNRDLIIVQTGCTITRVI 238


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +2

Query: 59  ML*ELRKLSSRQVIVSNIFVYTLRKHILYHGQFDVLSSGCEFSVII 196
           M+ EL  LS    +    F      H++++    ++ +GC  + +I
Sbjct: 193 MIAELETLSVEPKVSPMTFCRVFPFHLMFNRDLIIVQTGCTITRVI 238


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 129 RKVYTKILDTITCLEDNFLNSYNIYAKCYGIVGIK 25
           R   TKI+ +      N+ N+YN     Y I+ I+
Sbjct: 297 RSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIE 331


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 129 RKVYTKILDTITCLEDNFLNSYNIYAKCYGIVGIK 25
           R   TKI+ +      N+ N+YN     Y I+ I+
Sbjct: 308 RSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIE 342


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 350 LWLHHSPRW 376
           LWL+HSP +
Sbjct: 660 LWLNHSPNY 668


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 117 CILCENTFY 143
           C++C+N FY
Sbjct: 194 CVVCQNFFY 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,421
Number of Sequences: 438
Number of extensions: 3346
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)