Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N22
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   2.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   4.1  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   5.5  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    24   7.2  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    24   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   7.2  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 117 LFPVIYNSFTCLFLFIFFVKYK-ISEQCYILLHVDFKNAGRRYCIFKLIRFGQGCATD 287
           +FP I +S      ++F V  + +S   ++++    +    RY  F  I+FG  C ++
Sbjct: 415 VFPFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSN 472


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 220 KSTCNSM*HCSLILYLTKKIN 158
           +S+CNSM  CSL L+L   ++
Sbjct: 404 ESSCNSMKQCSLHLFLDPHVS 424


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 142 SRVYFYLFFSLNTKLVSSVTYCY 210
           S+  +YL  +L+T L++ + YC+
Sbjct: 64  SKFVYYLAITLHTSLLTKLIYCH 86


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 IRSRLCDRL*RERLT*IRVEKFCTFVEGISR 355
           +++ + ++  + +LT +R  +  TF++GISR
Sbjct: 232 LQAEIIEKWPKHKLTKLRSHRIATFLKGISR 262


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 202 M*HCSLILYLTKKINKNKHVKLLYITGNKLLPH 104
           M HC +  +  +K+++N H  + Y    K+LPH
Sbjct: 146 MNHCWVFFHSEQKVDENSHGAVWY----KVLPH 174


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 132 YNSFTCLFLFIFFVKYKISEQC 197
           ++SF C FL  F V   + +QC
Sbjct: 21  FHSFHCFFLLCFTVMLCVVQQC 42


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 318 LKNFALSSKEYHVHN 362
           +K F  SSKEY+ HN
Sbjct: 67  VKQFTFSSKEYNSHN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,262
Number of Sequences: 5004
Number of extensions: 29249
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)