Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N22
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692...    28   2.2  
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    27   3.9  
06_01_0388 - 2773559-2773621,2774141-2774250,2774360-2774423,277...    26   9.1  

>03_06_0300 +
           32967935-32968029,32968975-32969077,32969175-32969244,
           32969464-32969581,32969687-32969744,32969831-32969895,
           32969990-32969996,32970087-32970147,32970757-32970776,
           32970858-32970923,32971126-32971293,32971372-32971629,
           32972098-32972310,32972824-32973099
          Length = 525

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 225 NAGRRYCIFKLIRFGQGCATDSRERD*HKFVLKNFALSSKEYH 353
           NAG  +C    +R   G A +S ER   K ++K+ AL  KEY+
Sbjct: 406 NAGFFHCNRSFVRECVGPAKESYERRMSKMLVKSRALFIKEYN 448


>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
            33304811-33304877,33304968-33305102,33305186-33305297,
            33305852-33306009,33306177-33306300,33306406-33306542,
            33307284-33307403,33307878-33308025,33308674-33308931,
            33309090-33309127,33309232-33309674,33309761-33309845,
            33310063-33310123,33310277-33310453,33311611-33312408,
            33314394-33314693
          Length = 1303

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 96   TNQCGSNLFPVIYNSFTCLF-LFIFFVKYKIS-EQCYI 203
            T+ CGS LF V+     C+F L I    Y ++ EQC I
Sbjct: 971  TDACGSYLFTVLQKCKECVFCLHIVTALYSLNVEQCSI 1008


>06_01_0388 -
           2773559-2773621,2774141-2774250,2774360-2774423,
           2775102-2775282,2775355-2775455,2777340-2777426,
           2778028-2778140,2778430-2778679
          Length = 322

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 109 EVIYFQLYITASRVYFYLFFSLNTKLVSSVTYC 207
           E+I     +T   +Y +++FS+   +V  ++YC
Sbjct: 210 ELITLIYLVTEESIYSFVYFSIEDVMVLIISYC 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,296
Number of Sequences: 37544
Number of extensions: 162569
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)