Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N22
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    29   1.5  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   3.5  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    27   6.1  
AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical ...    26   8.1  

>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 36   LQDYNLPIKKIYIYLFLHI*TNQCGSNLFPVIYNSFTCLFLFIFF---VKYKIS 188
            L++    + +IY++  L++  N+    LF V   S  C   FIFF   +K++IS
Sbjct: 2235 LEECYFIVSQIYLFSKLYLTLNESNRQLFRVHRFSTFCFSQFIFFIILIKFRIS 2288


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 114 NLFPVIYNSFTCLFLFIFFVKYKISEQCYILLHVDFKNA 230
           +LF +IY   T LFLF+ F K+ +  Q +  +H  +KN+
Sbjct: 448 SLFAIIY---TELFLFLSFSKWVLHFQLFSDIHTRYKNS 483


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 220 KSTCNSM*HCSLILYLTKKINKNKHVKLLYIT-GNKLL 110
           KS CN     S  LY++K   +N  V L Y+T GN ++
Sbjct: 190 KSACNPKGVLSFYLYISKLFERNNGVILKYVTLGNAMV 227


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 220 KSTCNSM*HCSLILYLTKKINKNKHVKLLYIT 125
           KSTCN     S  LY++    +N  V L Y+T
Sbjct: 190 KSTCNPKGVLSYYLYISDLFERNNEVILKYVT 221


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 42  DYNLPIKKIYIYLFLHI*TNQCGSNLFPV--IYNSFTCLFLFIFFVKYKI 185
           DY L +  + ++LF  I  +   S LF    I  + TC+  F+FF+ +++
Sbjct: 148 DYTLLLFVLILFLFSSIAMSIFFSTLFTNANIATAATCVLWFVFFIPFQL 197


>AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical
           protein F08F1.3 protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  IYIFIFAYINKSVRK*FISSYI*QLHVFIFIYF 166
           I IFI  ++N S +    SS I  LH+ I +YF
Sbjct: 143 IVIFIAKFVNFSFKHVVFSSNIKFLHLKILVYF 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,623,732
Number of Sequences: 27780
Number of extensions: 168161
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)