Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N21
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    27   1.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   3.9  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   5.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.0  

>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 200 CVCHTRA---RDPFLSIRTHNTIAWCARAPHISMYL 102
           C+ + R    +D F+  R +NTI W +R P +  Y+
Sbjct: 26  CILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYI 61


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 258 KISSVSVAY----GRVTRETSQVVCVSHQGSGSLSLYPHAQYNCMVRARTSHIYVSID 97
           ++S+  +AY      + R+   V  V   GS +L  YPH    C++ A  S+    I+
Sbjct: 242 EVSTTKLAYYVRKPNIVRDLDLVNTVWPPGSFALGEYPHVDTYCLMSAENSYTEFHIE 299


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 91  LMILPQVPLRKPCYDFYFL*MIKFGQLP 8
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 249 TIFSTCAIVARHSLVAECARDTALF 323
           T + T A + RH+L   C  DTA+F
Sbjct: 368 TAYYTKAKLMRHNLPGSCVLDTAVF 392


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 386  AGLAIVQTRSSPLLARHPVAAEER 315
            A  +I++TR  P + RH +A  ER
Sbjct: 953  ASTSILETRRRPAVGRHSLAGGER 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,147
Number of Sequences: 5004
Number of extensions: 39859
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)