Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N21
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 30 1.3
01_05_0334 - 21068575-21068642,21068723-21068813,21068955-210690... 30 1.3
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 29 3.0
03_02_0776 + 11103195-11103812 29 3.0
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 28 3.9
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 3.9
01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070 28 5.2
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 27 6.8
05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235... 27 6.8
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310... 27 6.8
06_03_0897 + 25762154-25763056,25764189-25764800 27 9.0
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 9.0
02_01_0648 + 4828668-4829585,4829677-4830330 27 9.0
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 31 FRGSKSRNKVSVGEPAEGSLTCVDRYIDM*GARAHHAIVL 150
++ K+ V +GE A VDRY + G+++HH I L
Sbjct: 3 YQHGKTHQNVVMGERARVVRCAVDRYFLLDGSKSHHIICL 42
>01_05_0334 -
21068575-21068642,21068723-21068813,21068955-21069071,
21069166-21069219,21069334-21070004,21070445-21070473,
21070576-21070643,21072382-21072621
Length = 445
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -1
Query: 452 GVASLGALVVRILTSLSASKAIAGLAIVQTRSSPLLARHPVAAEERRVTGT 300
GV +LGA S A+ LA++ S+PLL R+ VAA E V+ T
Sbjct: 166 GVVNLGARQPYDRNQSDVSTALLFLAVL-CHSAPLLLRYAVAAGEHSVSAT 215
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = -3
Query: 417 SHQSKRVKSYRRSRN----RSNPVESATSTPPRCS 325
S SK S RR +N +++P+ES +S+PPR S
Sbjct: 992 SSSSKASGSQRRKQNFHVAKTSPIESVSSSPPRIS 1026
>03_02_0776 + 11103195-11103812
Length = 205
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 397 DALRLVRIRTTSAPSDATPRSRPVR 471
DA+RLVR + S+ + A PRSR VR
Sbjct: 54 DAIRLVRSGSPSSSAAAPPRSRAVR 78
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 58 VSVGEPAEGSLTCVDRYIDM*GARAHHAIVLCVRIERKGSRAL 186
V +G PA S V++ + G H A+ +C+ I+++ + L
Sbjct: 388 VRIGTPAMTSRGLVEKDFEQIGEFLHQAVTICLNIQKEHGKLL 430
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 150 VRADREKGIPSPGVTHTQLGWFPASRGRTRP 242
+RAD EK I P VT + W P R RT P
Sbjct: 1449 LRADAEKNINKPIVTFEEKQWVP-MRSRTDP 1478
>01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070
Length = 622
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 210 WFPASRGRTRPRPTIFSTCAIVARHSLVAECAR 308
W A+RGR P +F AIV H + A+ AR
Sbjct: 190 WSAAARGRPSPPAPVFDRSAIV--HPMAADVAR 220
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -3
Query: 378 RNRSNPVESATSTPPRCSGRAPCHGHTPPLESDVRQSHM*KISSVSVAYGRVTRETSQ 205
RN ++P +A PP G+A +P + V K V AY R ++ Q
Sbjct: 151 RNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQ 208
>05_07_0062 +
27423081-27423287,27423372-27423449,27423548-27423597,
27423714-27423767,27423965-27424017,27424101-27424173,
27424718-27424767,27424919-27424987,27425183-27425291,
27425658-27425725,27425982-27426082,27426260-27426412,
27426503-27426570,27426898-27426943,27427027-27427107
Length = 419
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 198 TQLGWFPASRGRTRPRPTIFSTCAIVARHSLVAEC 302
TQ GW P +RG R RP + + +R + C
Sbjct: 11 TQPGWAPTTRGGGRRRPLALALGRLSSRRPVRCRC 45
>03_06_0135 +
31928838-31929698,31929783-31929932,31930795-31931065,
31931157-31931249,31931442-31931616,31931715-31931960,
31932100-31932294,31932604-31932802
Length = 729
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 108 HRYVRCARAPCNCIVRADREKGIPSPGVTHTQLGWF 215
HR C R P C+V +E P+P + W+
Sbjct: 255 HRERSCPRLPATCLVSMPKEYKPPAPWPERKEKVWY 290
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 184 LV*HTHNLAGFPRHAAVRDRDRRY 255
+V H H+LAG +H A+RD RR+
Sbjct: 51 VVGHLHHLAGALQHRAMRDIARRH 74
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 63 RRGTCGRIINVCR*IHRYVRCARAPC 140
RRG+ +I+VC+ I CA+ PC
Sbjct: 380 RRGSATELISVCKEIEFPEMCAKFPC 405
>02_01_0648 + 4828668-4829585,4829677-4830330
Length = 523
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 184 LV*HTHNLAG-FPRHAAVRDRDRRY--FLHVRLSHVTL*WRSVPVTRRSSAAT 333
+V H H+LAG P H A+RD RR+ + +RL V S P R T
Sbjct: 44 VVGHLHHLAGGLPPHRAMRDLARRHGPLMLLRLGEVEAVVASSPDAAREIMRT 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,181
Number of Sequences: 37544
Number of extensions: 328494
Number of successful extensions: 1047
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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