Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N21
         (518 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131772-1|AAI31773.1|  983|Homo sapiens PHC3 protein protein.         32   1.4  
AJ320486-1|CAC86587.2|  983|Homo sapiens homolog of polyhomeotic...    32   1.4  
AF444193-1|AAM51781.1|  983|Homo sapiens polyhomeotic 3 protein ...    32   1.4  
AF380154-1|AAM46139.1|  964|Homo sapiens early development regul...    32   1.4  
EF560717-1|ABQ59027.1|  983|Homo sapiens PHC3 protein protein.         30   4.2  
AL606468-1|CAH70697.1|  730|Homo sapiens denticleless homolog (D...    29   7.4  
AL592297-1|CAH73803.1|  730|Homo sapiens denticleless homolog (D...    29   7.4  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    29   9.8  
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             29   9.8  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    29   9.8  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    29   9.8  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     29   9.8  

>BC131772-1|AAI31773.1|  983|Homo sapiens PHC3 protein protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -2

Query: 274 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 95
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 94  TLMILPQVPLRKP 56
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AJ320486-1|CAC86587.2|  983|Homo sapiens homolog of polyhomeotic 3
           protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -2

Query: 274 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 95
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 94  TLMILPQVPLRKP 56
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AF444193-1|AAM51781.1|  983|Homo sapiens polyhomeotic 3 protein
           protein.
          Length = 983

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -2

Query: 274 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 95
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 94  TLMILPQVPLRKP 56
           +L+   Q+PL  P
Sbjct: 304 SLIKHQQIPLHSP 316


>AF380154-1|AAM46139.1|  964|Homo sapiens early development
           regulator 3 protein.
          Length = 964

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -2

Query: 274 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 95
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 225 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 284

Query: 94  TLMILPQVPLRKP 56
           +L+   Q+PL  P
Sbjct: 285 SLIKHQQIPLHSP 297


>EF560717-1|ABQ59027.1|  983|Homo sapiens PHC3 protein protein.
          Length = 983

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -2

Query: 274 TIAHVENIVGLGRVRPRDAGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLCIYRH 95
           TI H +  V   ++  RD   + +    +P L    +   RT  +H   A  +Y  I  H
Sbjct: 244 TICHNKTTVTSSKISQRDPSPESNKKGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPH 303

Query: 94  TLMILPQVPLRKP 56
           +L+   ++PL  P
Sbjct: 304 SLIKHQRIPLHSP 316


>AL606468-1|CAH70697.1|  730|Homo sapiens denticleless homolog
           (Drosophila) protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 417 SHQSKRVKSYRRSRNRSNPVESATSTPPRCSGRAPCHGHTP 295
           S QS   K+ R   N SN   S+ +  P C+G  P   +TP
Sbjct: 425 SSQSTPAKAPRAKCNPSNSSPSSAACAPSCAGDLPLPSNTP 465


>AL592297-1|CAH73803.1|  730|Homo sapiens denticleless homolog
           (Drosophila) protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 417 SHQSKRVKSYRRSRNRSNPVESATSTPPRCSGRAPCHGHTP 295
           S QS   K+ R   N SN   S+ +  P C+G  P   +TP
Sbjct: 425 SSQSTPAKAPRAKCNPSNSSPSSAACAPSCAGDLPLPSNTP 465


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
            SRm300 protein.
          Length = 2296

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 174  IPSPGVTHTQLGWFPASRGRTRP 242
            +P+PGV H+ +G  PAS G  +P
Sbjct: 2078 VPAPGVPHSDVGEPPASTGAQQP 2100


>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 174  IPSPGVTHTQLGWFPASRGRTRP 242
            +P+PGV H+ +G  PAS G  +P
Sbjct: 1528 VPAPGVPHSDVGEPPASTGAQQP 1550


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 174  IPSPGVTHTQLGWFPASRGRTRP 242
            +P+PGV H+ +G  PAS G  +P
Sbjct: 2496 VPAPGVPHSDVGEPPASTGAQQP 2518


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
          Length = 1275

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 174  IPSPGVTHTQLGWFPASRGRTRP 242
            +P+PGV H+ +G  PAS G  +P
Sbjct: 1019 VPAPGVPHSDVGEPPASTGAQQP 1041


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 174  IPSPGVTHTQLGWFPASRGRTRP 242
            +P+PGV H+ +G  PAS G  +P
Sbjct: 2544 VPAPGVPHSDVGEPPASTGAQQP 2566


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,484,767
Number of Sequences: 237096
Number of extensions: 1750771
Number of successful extensions: 4578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4573
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)