Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N21
         (518 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06589-2|CAA29813.1|  964|Drosophila melanogaster su(wa) protein...    31   0.71 
X06589-1|CAA29812.1| 1042|Drosophila melanogaster su(wa) protein...    31   0.71 
AY118635-1|AAM50004.1|  964|Drosophila melanogaster SD01276p pro...    31   0.71 
AE014298-146|AAG22382.2|  963|Drosophila melanogaster CG3019-PA,...    31   0.71 
AE014298-145|ABI30963.1|  927|Drosophila melanogaster CG3019-PF,...    31   0.71 
AL132651-1|CAB65880.1| 1032|Drosophila melanogaster EG:BACR7A4.1...    30   1.6  
AL109630-17|CAB65879.1| 1032|Drosophila melanogaster EG:BACR7A4....    30   1.6  
EF587234-1|ABQ85891.1|  981|Drosophila melanogaster MCPH1 isofor...    28   8.7  
AY122187-1|AAM52699.1|  826|Drosophila melanogaster LD43341p pro...    28   8.7  
AE013599-1361|AAF58607.3|  779|Drosophila melanogaster CG8981-PA...    28   8.7  
AE013599-1360|AAF58605.3|  826|Drosophila melanogaster CG8981-PB...    28   8.7  

>X06589-2|CAA29813.1|  964|Drosophila melanogaster su(wa) protein
           protein.
          Length = 964

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 423 TDSHQSKRVKSYRRSRNRSNPVESATSTP 337
           T S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 828 TRSSSSRHLKTHRRSRSRSKNVRSSDSSP 856


>X06589-1|CAA29812.1| 1042|Drosophila melanogaster su(wa) protein
           protein.
          Length = 1042

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 423 TDSHQSKRVKSYRRSRNRSNPVESATSTP 337
           T S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 906 TRSSSSRHLKTHRRSRSRSKNVRSSDSSP 934


>AY118635-1|AAM50004.1|  964|Drosophila melanogaster SD01276p
           protein.
          Length = 964

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 423 TDSHQSKRVKSYRRSRNRSNPVESATSTP 337
           T S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 828 TRSSSSRHLKTHRRSRSRSKNVRSSDSSP 856


>AE014298-146|AAG22382.2|  963|Drosophila melanogaster CG3019-PA,
           isoform A protein.
          Length = 963

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 423 TDSHQSKRVKSYRRSRNRSNPVESATSTP 337
           T S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 827 TRSSSSRHLKTHRRSRSRSKNVRSSDSSP 855


>AE014298-145|ABI30963.1|  927|Drosophila melanogaster CG3019-PF,
           isoform F protein.
          Length = 927

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 423 TDSHQSKRVKSYRRSRNRSNPVESATSTP 337
           T S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 807 TRSSSSRHLKTHRRSRSRSKNVRSSDSSP 835


>AL132651-1|CAB65880.1| 1032|Drosophila melanogaster
           EG:BACR7A4.10,FBgn0003638;su(w[a]) protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 417 SHQSKRVKSYRRSRNRSNPVESATSTP 337
           S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 898 SSSSRHLKTHRRSRSRSKNVRSSDSSP 924


>AL109630-17|CAB65879.1| 1032|Drosophila melanogaster
           EG:BACR7A4.10,FBgn0003638;su(w[a]) protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 417 SHQSKRVKSYRRSRNRSNPVESATSTP 337
           S  S+ +K++RRSR+RS  V S+ S+P
Sbjct: 898 SSSSRHLKTHRRSRSRSKNVRSSDSSP 924


>EF587234-1|ABQ85891.1|  981|Drosophila melanogaster MCPH1 isoform A
           protein.
          Length = 981

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 411 QSKRVKSYRRSRNRSNPVESATSTP-PRCSGRAPCHGHTPPLESDVRQSHM*KISSVSVA 235
           Q+++   +    + + P    +ST  PR S   P    TPP+ +  R+S + +ISS +  
Sbjct: 349 QAQKSLQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEISSPAAT 408

Query: 234 YGRVTRETSQVV 199
             R+TR  S ++
Sbjct: 409 DTRMTRRRSSLL 420


>AY122187-1|AAM52699.1|  826|Drosophila melanogaster LD43341p
           protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 411 QSKRVKSYRRSRNRSNPVESATSTP-PRCSGRAPCHGHTPPLESDVRQSHM*KISSVSVA 235
           Q+++   +    + + P    +ST  PR S   P    TPP+ +  R+S + +ISS +  
Sbjct: 396 QAQKSLQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEISSPAAT 455

Query: 234 YGRVTRETSQVV 199
             R+TR  S ++
Sbjct: 456 DTRMTRRRSSLL 467


>AE013599-1361|AAF58607.3|  779|Drosophila melanogaster CG8981-PA,
           isoform A protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 411 QSKRVKSYRRSRNRSNPVESATSTP-PRCSGRAPCHGHTPPLESDVRQSHM*KISSVSVA 235
           Q+++   +    + + P    +ST  PR S   P    TPP+ +  R+S + +ISS +  
Sbjct: 349 QAQKSLQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEISSPAAT 408

Query: 234 YGRVTRETSQVV 199
             R+TR  S ++
Sbjct: 409 DTRMTRRRSSLL 420


>AE013599-1360|AAF58605.3|  826|Drosophila melanogaster CG8981-PB,
           isoform B protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 411 QSKRVKSYRRSRNRSNPVESATSTP-PRCSGRAPCHGHTPPLESDVRQSHM*KISSVSVA 235
           Q+++   +    + + P    +ST  PR S   P    TPP+ +  R+S + +ISS +  
Sbjct: 396 QAQKSLQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVAEISSPAAT 455

Query: 234 YGRVTRETSQVV 199
             R+TR  S ++
Sbjct: 456 DTRMTRRRSSLL 467


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,128,828
Number of Sequences: 53049
Number of extensions: 539771
Number of successful extensions: 1494
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)