Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N21
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    33   0.093
U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U41279-15|AAK31417.2|  316|Caenorhabditis elegans Hypothetical p...    30   1.1  
AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical...    28   4.6  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    27   6.1  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    27   6.1  

>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 154 RTIQLHGARAHLTYLCIYRHTLMILPQVPLRKPCYDFYF 38
           R + +H  R  LTY  + +  + IL  +PL    +DFYF
Sbjct: 206 RNVDVHRRRVQLTYSMLLQSMIPILVSIPLLVGSFDFYF 244


>U40799-8|AAA81487.1|  552|Caenorhabditis elegans Hypothetical
           protein F42C5.9 protein.
          Length = 552

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 220 AGNQPSCVCVTPGLGIPFSLSARTIQLHGARAHLTYLC 107
           AG  P+   V  G  +  +   RT+ +HG R H+ Y C
Sbjct: 102 AGEAPAQELVLSGADVDANKDERTLTIHGGREHVKYYC 139


>U41279-15|AAK31417.2|  316|Caenorhabditis elegans Hypothetical
           protein C17C3.3 protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 251 DIFYMCDCRTSLSSGGVCP*HGALPLQRGGVLVA 352
           D +++ DC++S+S+ G+C   G +  +R GVL+A
Sbjct: 266 DDWFLLDCKSSVSAEGICFIQGKI-WRRDGVLIA 298


>AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical
           protein Y42G9A.1 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 426 GTDSHQSKRVKSYRRSRNRSNPVESATSTPPRCSGRAP 313
           G  +H+ KRV    R R  S   + + S  PR S R+P
Sbjct: 239 GNSAHEVKRVLLKARRREESEESDVSFSKKPRPSSRSP 276


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 72  TCGRIINVCR*IHRYVRCARAPCNCIVRA----DREKGIPSPGVTHT 200
           +C    ++C  +H    CA   C+C++ A    D  K   SP V HT
Sbjct: 322 SCANNFDLCAVVHSVDFCANDLCHCMLDAAESDDIHKKECSPAVAHT 368


>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 167 LSIRTHNTIAWCARAPHIS 111
           LSI+  NT+AWC+  P  S
Sbjct: 143 LSIQMFNTVAWCSSFPQFS 161


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 167 LSIRTHNTIAWCARAPHIS 111
           LSI+  NT+AWC+  P  S
Sbjct: 396 LSIQMFNTVAWCSSFPQFS 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,610
Number of Sequences: 27780
Number of extensions: 249499
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)