Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N20
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.   111   3e-27
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.3  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score =  111 bits (268), Expect = 3e-27
 Identities = 47/69 (68%), Positives = 57/69 (82%)
 Frame = +2

Query: 152 VPKNLISPCDGCAAPYGFRNQMTLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMHAVVC 331
           +PK+L  PCDGCAAPYG++N MTLS+DT  F   V  A VSGNLDAPEGGFDAIM A+VC
Sbjct: 12  MPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNLDAPEGGFDAIMQAIVC 71

Query: 332 KQQIGWRDQ 358
           ++QIGWR++
Sbjct: 72  RRQIGWREK 80



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 118 VDKLVMPYVS 147
           V+K+VMPYVS
Sbjct: 1   VEKVVMPYVS 10


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 VAQADVSGNLDAPEGGFDAIMHAVVCKQQI 343
           + + DV+G+++A    FD   +  +C+  I
Sbjct: 482 IVKGDVAGSVEALLDIFDTYTYDTICQLNI 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,446
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)