Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N18
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   104   3e-25
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   104   3e-25
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   9.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  104 bits (249), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 51/55 (92%)
 Frame = +2

Query: 5   RAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLRGTGGAFVLVLYDEIKKLL 169
           RAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN+LRGTGGA VLVLYDEIK LL
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.5 bits (63), Expect = 0.012
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  YKNTIHCWATIAKTEGGAAFFKGAFSNVLR 115
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  104 bits (249), Expect = 3e-25
 Identities = 47/55 (85%), Positives = 51/55 (92%)
 Frame = +2

Query: 5   RAKSDILYKNTIHCWATIAKTEGGAAFFKGAFSNVLRGTGGAFVLVLYDEIKKLL 169
           RAKS+ILYK+T+HCWATI KTEGG AFFKGAFSN+LRGTGGA VLVLYDEIK LL
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.5 bits (63), Expect = 0.012
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  YKNTIHCWATIAKTEGGAAFFKGAFSNVLR 115
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 81  PSSRAPSRTCSEVP 122
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 102  EKAPLKKAAPPSVLA 58
            E APL  A PP V++
Sbjct: 1106 ENAPLPPALPPQVVS 1120


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 81  PSSRAPSRTCSEVP 122
           P  RAPS  C+E P
Sbjct: 113 PGMRAPSFRCTERP 126


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 105 FEKAPLKKAAPPSVLAMV 52
           FEK  LK  A P+V  MV
Sbjct: 265 FEKLELKWFAVPAVSGMV 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,972
Number of Sequences: 438
Number of extensions: 1673
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)