Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N16
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 29 0.55
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 1.7
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 25 5.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.7
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 25 8.9
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 8.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 25 8.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 8.9
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 8.9
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.7 bits (61), Expect = 0.55
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 270 PPSYANEGPYSYDISKPNYNKVPSISQSAKPDS 368
P YA+E P SYDI + Y ++ +S+ D+
Sbjct: 11 PRGYASEFPKSYDIDEIEYERINQLSKLKLEDA 43
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 173 SSISAITYSFWRNFLWS 123
+S+ AI YS+ RNF+WS
Sbjct: 223 TSLPAIIYSWGRNFMWS 239
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 218 LVITIRYAIFI*KS-RSSISAITYSFWRNFLWSWRV 114
L IT+ +FI + R + A+T W +FL+ W V
Sbjct: 326 LQITVLIKLFIKPTWRVFVGAVTLCGWISFLFGWHV 361
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +3
Query: 33 IKPIGKPVASIPIRGPPRAYGP-PKP 107
I P+ KP A +P PP P PKP
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 395 MMMDVL-LHN*VGFS*LRNRWYFVVVWFRNIVTVWSFVGITWRFSNIVN 252
M+ ++L N + S +++F++V N+ +++ G F+NI++
Sbjct: 103 MLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNIIS 151
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 314 RNIVTVWSFVGITWRFSNIVNFTSVNSA 231
+N+VTVWS +R N+ + V+ +
Sbjct: 249 KNLVTVWSAPNYCYRCGNVASVMKVDES 276
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +3
Query: 201 SNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPNY 326
SNS Y S + G YG NY SY Y + S NY
Sbjct: 54 SNSTYGSSNNYGNYGSSNNY----GSYGASNTYGSNGSSNNY 91
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
G+GGN R GF G S + GG GG
Sbjct: 153 GFGGNSRGGFG---GGSRGGFGGGSRGGSRGG 181
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 238 FTEVKLTMLLNLQ-VMPTKDHTVTIFLNQTTTKYHLFLSQLNPTQLCNS 381
FT KL + ++ TK VTI LN+ ++LF + LC+S
Sbjct: 170 FTIAKLRQVYGSNSLVSTKKSIVTILLNEVLHPFYLFQAVSVLIWLCDS 218
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 154 VMAEMEDLDFQINMAYLIVITSSHKVAEFTEVKLTMLLNLQVMPTKD 294
V+ LDF+IN L + ++ KLT+ L +Q PT++
Sbjct: 927 VLVADNHLDFEINPLTLFKSFNPEVASQTDSPKLTLSLAMQHPPTRN 973
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 246 GEVNYVTKPPSYANEGPYSYDISKPNYNKVPSISQSA 356
G++ YV PP+Y N G + +K ++ K+ S + +
Sbjct: 458 GKLLYVHPPPNYPNSGS---EFNKEHHQKIVSATSDS 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,109
Number of Sequences: 5004
Number of extensions: 39120
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -