Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N16
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 32 0.24
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 30 1.3
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 30 1.3
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 30 1.3
06_02_0127 + 12140843-12140966,12141170-12141567 29 2.9
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 29 2.9
12_02_1061 - 25756366-25757567,25758692-25758797 28 3.9
04_04_0708 - 27441373-27442611 28 3.9
06_02_0122 - 12095385-12095713,12096018-12096120 28 5.1
04_03_1001 - 21609280-21610131 28 5.1
10_08_0213 - 15912048-15912716 27 6.8
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 27 6.8
10_08_0500 - 18357828-18358649 27 8.9
03_02_0122 - 5742530-5743705 27 8.9
02_01_0713 - 5332145-5332351,5332675-5332893,5334347-5334559,533... 27 8.9
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 32.3 bits (70), Expect = 0.24
Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Frame = +3
Query: 30 DIKPIGKPVASIPIRGPPRA--YGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVS 203
D +P G P A PP Y P P Y GYGGN R G YG
Sbjct: 292 DFRP-GGPSAPGTYGQPPAPGNYAQPHPPTYPGSNQGAPGVNPGYGGNNRQGPGPAYGGD 350
Query: 204 N----SNYQFSQSGG 236
N SN SQS G
Sbjct: 351 NWQGGSNQYPSQSEG 365
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Frame = +3
Query: 15 YAQPVDIKPIGKPVASIPIRGPPRAYG----PPKPMLYXXXXXXXXXXXXGYGGNGRPGF 182
+ +P ++ PVA P GPP YG PP P GYG P +
Sbjct: 146 HRRPEIVRSAAPPVAPPPQMGPPPPYGSGYAPPPP----------YGSGYGYGYGPAPDY 195
Query: 183 SDKYGVSNSNYQ--FSQSGGIYGG 248
V+N Y + GG GG
Sbjct: 196 GGGMAVANGGYDPGYGGMGGASGG 219
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.9 bits (64), Expect = 1.3
Identities = 36/134 (26%), Positives = 46/134 (34%), Gaps = 16/134 (11%)
Frame = +3
Query: 15 YAQPVDIKPIGKPVASIPIRGPP-RAYGPP--KPMLYXXXXXXXXXXXXGYGGNGRPGFS 185
Y P P G P + PP +YGPP +P Y GY P
Sbjct: 497 YGGPGQWAPRGAPAGDGTYQAPPPTSYGPPSQQPPAY-GQTYGPTTGPDGYSQQSYPQQG 555
Query: 186 DK----YGVS-NSNYQFSQSGGIYGGEVNYVTKPPSYA-----NEGPYSYD--ISKPNY- 326
+ YG S + ++Q G GG Y P+Y N Y Y + PNY
Sbjct: 556 AQAPATYGQSAPAGPGYAQQGAQQGGYAQYPQSQPAYGDQAAQNNANYGYQGAPADPNYG 615
Query: 327 NKVPSISQSAKPDS 368
N P + P S
Sbjct: 616 NAYPQAGYGSTPAS 629
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPNYNK 332
GYG G GFS+ YG S S + G + P +A GP S NY +
Sbjct: 448 GYGPQGGSGFSESYGYSGS--------PSHRGNAGMKSSPSPFAPSGPSSG--GSGNYGR 497
Query: 333 VPS 341
+P+
Sbjct: 498 LPT 500
>06_02_0127 + 12140843-12140966,12141170-12141567
Length = 173
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
GYGG G G++ YG GG YGG
Sbjct: 124 GYGGGGYGGYNKGYGGGGGGGYSKGFGGGYGG 155
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
GYGG G G+S +G + GG YGG
Sbjct: 136 GYGGGGGGGYSKGFGGGYGGGGY-PGGGYYGG 166
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPY 299
GY GN G+ + N+N +F Q + G Y + Y +G Y
Sbjct: 435 GYNGNNNGGYQQRGYNGNNNGRFQQERAVNSGNGGY--RQGGYRGDGGY 481
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 21 QPVDIKPIGKPVASIPIRGPPRAYGPP 101
Q V + P+ S+P+R P YGPP
Sbjct: 393 QAVSVLRFEAPLPSLPVRMPVATYGPP 419
>04_04_0708 - 27441373-27442611
Length = 412
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/71 (22%), Positives = 20/71 (28%)
Frame = +3
Query: 60 SIPIRGPPRAYGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVSNSNYQFSQSGGI 239
S P+ PP PP P L + GR G G + F I
Sbjct: 236 SPPLLPPPPPPPPPPPFLDHDRPALRKAKARSFNDYGRVGLQTAAGCGGGGHNFRSKSAI 295
Query: 240 YGGEVNYVTKP 272
+ T P
Sbjct: 296 QASRSTFPTSP 306
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
GYGG G+ YG S Y GG YGG
Sbjct: 95 GYGGGYGRGYGGGYGGSGGGYGGGYGGG-YGG 125
>04_03_1001 - 21609280-21610131
Length = 283
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/63 (23%), Positives = 23/63 (36%)
Frame = +3
Query: 57 ASIPIRGPPRAYGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVSNSNYQFSQSGG 236
+S+P PP P + G G+ P D +G ++ S GG
Sbjct: 100 SSVPAPAPPPQLALPYHAVPAAAWHHAAAAAAGRAGSETPPRMDDFGPGSAGGSGSGGGG 159
Query: 237 IYG 245
I+G
Sbjct: 160 IFG 162
>10_08_0213 - 15912048-15912716
Length = 222
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQ----FSQSGGIYGG 248
G+GG G G YG S S Y + Q GG YGG
Sbjct: 151 GHGGGGGGGQGGGYG-SGSGYGSGRGYGQGGGAYGG 185
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPY 299
GYG G P F +G S Y S GG YG Y +Y G Y
Sbjct: 326 GYGYGGNPAFGSGFG---SGYGGSMYGGPYGA---YGAYGGAYGGGGAY 368
>10_08_0500 - 18357828-18358649
Length = 273
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/62 (30%), Positives = 23/62 (37%)
Frame = +3
Query: 78 PPRAYGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVN 257
PPR PP P+L + F D GV Y + +GGI GG V
Sbjct: 22 PPRPPPPPPPLLMVRHGLARWLTDLD---DELMVFDDDLGVQGQGYAAAANGGIGGGGVE 78
Query: 258 YV 263
V
Sbjct: 79 AV 80
>03_02_0122 - 5742530-5743705
Length = 391
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPYS---YDISKPN 323
GYGG GR D Y ++ GG+Y E +Y K PS G Y Y+ +
Sbjct: 153 GYGG-GRYEEEDNYKKKPTSGGGGYGGGMYEEEDDY-KKKPSSGGGGGYGGGRYE-EEDE 209
Query: 324 YNKVPS 341
Y K PS
Sbjct: 210 YRKKPS 215
>02_01_0713 -
5332145-5332351,5332675-5332893,5334347-5334559,
5334637-5334730,5334860-5335020,5335114-5335315,
5335619-5335784,5336208-5336286
Length = 446
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 159 GGNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
GG G GF+ +G Y F GG +GG
Sbjct: 401 GGGGGGGFNP-FGGGGQQYTFHYDGGFHGG 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,022,998
Number of Sequences: 37544
Number of extensions: 263609
Number of successful extensions: 759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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