Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N16
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical p...    30   0.85 
Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    28   4.6  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    28   4.6  
Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U80023-1|AAG24037.1|  180|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical
           protein F21C10.4 protein.
          Length = 196

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 159 GGNGRPGFS-DKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYAN 287
           GG GR G      G  +S+  FS+SGG  GG+ +  +   SY N
Sbjct: 24  GGGGRGGGGRGSSGARSSSRSFSRSGGAGGGKFHSSSSRSSYLN 67


>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 GNGRPGFSDKYGVSNSNYQFSQSGG 236
           GN RP  S   GVS S+Y+  +SGG
Sbjct: 574 GNKRPSISSSKGVSLSDYRMRRSGG 598


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 GNGRPGFSDKYGVSNSNYQFSQSGG 236
           GN RP  S   GVS S+Y+  +SGG
Sbjct: 574 GNKRPSISSSKGVSLSDYRMRRSGG 598


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/78 (23%), Positives = 39/78 (50%)
 Frame = +1

Query: 163 EMEDLDFQINMAYLIVITSSHKVAEFTEVKLTMLLNLQVMPTKDHTVTIFLNQTTTKYHL 342
           ++ED+       Y + +T +  V+ F E ++  ++N+Q +P         ++ +  + HL
Sbjct: 130 KVEDIWRGFEKVYGLGLTKAIGVSNFNESQIVRIMNIQKVP---------IHASQLELHL 180

Query: 343 FLSQLNPTQLCNSTSIII 396
           +L Q    +LC   +I+I
Sbjct: 181 YLPQKAHRELCKKHNILI 198


>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 153 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPN 323
           G GG GR GF      S  +++  Q G + GG+     +P SY      S++ S+P+
Sbjct: 76  GRGGGGR-GFGGNREFSAGDFE-KQYGRVGGGDDTNSGQPDSYGQADSASFNDSRPD 130


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 347  RNRWYFVVVWFRNIVTVWSFVGITWRF 267
            R +W  ++ W +   T+   +GITW F
Sbjct: 1074 RTKWGRIIGWLKGSATLLCLLGITWIF 1100


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 347  RNRWYFVVVWFRNIVTVWSFVGITWRF 267
            R +W  ++ W +   T+   +GITW F
Sbjct: 1074 RTKWGRIIGWLKGSATLLCLLGITWIF 1100


>Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical
           protein F33H2.2 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   LIYAQPVDIKPIGKPVASIPIRGPPRA 89
           L+   P+ I+    PV S+P+ GPP A
Sbjct: 511 LVAMAPLSIEACAIPVQSVPLIGPPNA 537


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 219  FSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPNYNKVPSISQSAKP 362
            FSQS      E  ++T PP Y+ +GP +   S P    V S+  S+KP
Sbjct: 1388 FSQSLTQQAQEDGFMT-PPDYS-DGPLTMASSPPTLPPVQSVPVSSKP 1433


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 219  FSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPNYNKVPSISQSAKP 362
            FSQS      E  ++T PP Y+ +GP +   S P    V S+  S+KP
Sbjct: 1388 FSQSLTQQAQEDGFMT-PPDYS-DGPLTMASSPPTLPPVQSVPVSSKP 1433


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 219  FSQSGGIYGGEVNYVTKPPSYANEGPYSYDISKPNYNKVPSISQSAKP 362
            FSQS      E  ++T PP Y+ +GP +   S P    V S+  S+KP
Sbjct: 1410 FSQSLTQQAQEDGFMT-PPDYS-DGPLTMASSPPTLPPVQSVPVSSKP 1455


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 243 GGEVNYVTKPPSYANEGPYSYDISKPNYNKVPSIS 347
           GG   Y T PPSY+  G Y+           P+IS
Sbjct: 92  GGNNGYATAPPSYSEGGSYARPKYLATMQPKPTIS 126


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +3

Query: 192 YGVSNSNYQFSQSGGI----YGGEVNYVTKPPSYANEG 293
           YG SNS  ++   GG     YGG  N+  K P Y N G
Sbjct: 514 YGGSNSRGRYG-GGGFQKRGYGGNDNFAPKRPRYDNGG 550


>U80023-1|AAG24037.1|  180|Caenorhabditis elegans Hypothetical
           protein F07C4.7 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 162 GNGRPGFSDKYGVSNSNYQFSQSGGIYGG 248
           G GR GF    G +N    F+ +GG  GG
Sbjct: 48  GGGRGGFGGNNGWNNGGGGFNGNGGFNGG 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,729
Number of Sequences: 27780
Number of extensions: 225660
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)