Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N12
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   144   7e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   140   1e-34
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    29   0.53 
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.71 
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   2.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   2.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.0  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   6.6  
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    25   6.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.7  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  144 bits (349), Expect = 7e-36
 Identities = 76/145 (52%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
 Frame = +3

Query: 51  SIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 230
           +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++ W  FY+ L
Sbjct: 10  AIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTL 68

Query: 231 TNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG 410
           TNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++   + YRRA    
Sbjct: 69  TNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---- 121

Query: 411 APHDKKAD-VGPGSADVEFRGGFGR 482
              +KK D   PG     FRGGFGR
Sbjct: 122 ---EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  140 bits (338), Expect = 1e-34
 Identities = 74/144 (51%), Positives = 94/144 (65%)
 Frame = +3

Query: 51  SIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 230
           +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++ W  FY+ L
Sbjct: 10  AIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTL 68

Query: 231 TNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG 410
           TNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R + D + YRRA    
Sbjct: 69  TNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA---- 120

Query: 411 APHDKKADVGPGSADVEFRGGFGR 482
               K     P      FRGGFGR
Sbjct: 121 --EKKDEGAAPSGFAPSFRGGFGR 142


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 143 VRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRFCLASTS*QPTFP 6
           + +  +IW FGC +  + +H S  E  +       LA  + Q +FP
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFEREVSQGGSLALAVCNAQYSFP 304


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 337 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 438
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 487 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 350
           +PLP PP NS+     P SA               +++S V +G+S
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 429  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 253
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 252  GIQYPHLLNTS 220
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 345 RPDAPARTAEDRSAYRRAPPAGAPH 419
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 17  VVKMLMPNKTVFYL*VPLQGGSHGS*ERLPCTQTSRSREDP*PP 148
           + ++ +PN+   Y+ VPLQ       ++ P  Q  +  + P PP
Sbjct: 149 IQQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQHQQPQQPQPP 192


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 243 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 347
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 327 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 470
           RRG V   D     A     Y R AP +G       D G G  D ++RG
Sbjct: 37  RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +3

Query: 273 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 416
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +3

Query: 273 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 449
           P    P+    S R  T     V  P +PAR     SAY  APPA G  +      G  S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338

Query: 450 ADVEFRG 470
           + +   G
Sbjct: 339 SSIPSSG 345


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 276 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 383
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 484 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVRTD 305
           P+P  P++ + A+P P S  LS               SAV   +S +P A    VS   D
Sbjct: 315 PVPMSPISISPAKPSPQSPKLS--------------QSAVGHPSSSIPAAAMHKVSYSDD 360

Query: 304 LFR 296
           L R
Sbjct: 361 LMR 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,948
Number of Sequences: 5004
Number of extensions: 38908
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)