Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N12
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   144   4e-35
Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p...    28   3.4  
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.      28   3.4  
Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   6.0  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  144 bits (348), Expect = 4e-35
 Identities = 78/148 (52%), Positives = 93/148 (62%)
 Frame = +3

Query: 54  IYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLT 233
           IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQFAWRH+YWYLT
Sbjct: 11  IYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLT 70

Query: 234 NEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 413
           + GI YLR +L LP EIVPAT+K   R   V       P A      DR AYR       
Sbjct: 71  DAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDREAYRT------ 123

Query: 414 PHDKKADVGPGSADVEFRGGFGRGRSAP 497
             +K  + GPG A V +R GFGRG   P
Sbjct: 124 --EKVTEAGPGGAPV-YRAGFGRGAPPP 148


>Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 149 LEVRDLLEIWMFGCMVVFLSYHDSLLEEVLIDRTRF 42
           +E+   L +  F    + LSY+DSL E+  IDRTRF
Sbjct: 777 IELLSNLHLNSFSTKDLILSYYDSLCEK--IDRTRF 810


>Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical
           protein F58D12.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 493 ADRPLPKPPLNSTSAEPGPTSA 428
           +DRP P+PP +S S+ P P SA
Sbjct: 45  SDRP-PRPPSSSASSSPAPGSA 65


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 114 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 293
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 294 TLKRSVRTETVR 329
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +3

Query: 333 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 479
           G VG P AP +  +   A   A P G P    A   PG A     G  G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,398
Number of Sequences: 27780
Number of extensions: 228715
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)