Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N11
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 296 1e-81
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 154 1e-38
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 152 4e-38
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 103 2e-23
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 28 1.2
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.7
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 4.9
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.9
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 6.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 296 bits (727), Expect = 1e-81
Identities = 133/187 (71%), Positives = 160/187 (85%)
Frame = +3
Query: 9 ETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNM 188
ET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNM
Sbjct: 198 ETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNM 257
Query: 189 VPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIF 368
VPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+F
Sbjct: 258 VPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317
Query: 369 RGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTXIQEL 548
RG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST IQE+
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 549 FKRISEQ 569
F+R+ +Q
Sbjct: 378 FRRLGDQ 384
Score = 32.7 bits (71), Expect = 0.043
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 572 TAMFRRKAFLHWY 610
+AMFRRKAFLHWY
Sbjct: 386 SAMFRRKAFLHWY 398
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 154 bits (373), Expect = 1e-38
Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Frame = +3
Query: 12 TYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMV 191
T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G LN DL + N+V
Sbjct: 201 TFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLV 260
Query: 192 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFR 371
P+PR+HF + +AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++R
Sbjct: 261 PYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYR 320
Query: 372 GRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGN 527
G + ++V + I+ K + FV+W P K +CD PP+ ++ A + N
Sbjct: 321 GDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSN 380
Query: 528 STXIQELFKRISEQSPLCSDAR 593
+T I E + R+ + L R
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKR 402
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 152 bits (368), Expect = 4e-38
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Frame = +3
Query: 12 TYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMV 191
T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G LN DL + N+V
Sbjct: 205 TFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLV 264
Query: 192 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFR 371
P+PR+HF + ++P+ S + + +V E+T Q F+ N M CDPR GRY+ ++R
Sbjct: 265 PYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYR 324
Query: 372 GRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGN 527
G + ++V + +I+++ + FV+W P K +C PP+ + A + N
Sbjct: 325 GDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSN 384
Query: 528 STXIQELFKRISEQSPLCSDAR 593
+T I E + R+ + L R
Sbjct: 385 TTSIAEAWSRLDHKFDLMYSKR 406
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 103 bits (247), Expect = 2e-23
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 7/190 (3%)
Frame = +3
Query: 21 IDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFP 200
+DN AL I L PT+ N LVS MS TT LR+PG +N DL + +++P P
Sbjct: 205 LDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSP 264
Query: 201 RLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIF 368
R HF + + P T++ ++ +A+ TV ++ +++ KN M + +P + ++++ I
Sbjct: 265 RCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDII 324
Query: 369 RGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTXI 539
+G +V + +L I+ + + F+ W P +++ A+ P +++ + N T I
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSI 384
Query: 540 QELFKRISEQ 569
LFKR +Q
Sbjct: 385 ASLFKRTLDQ 394
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 363 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTX 536
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 537 IQELFKR-ISEQSP 575
+EL++ + E +P
Sbjct: 403 KEELYETDLKESAP 416
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 66 VSACGSRCHRGLHC 25
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 342 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 467
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 66 VSACGSRCHRGLHC 25
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 342 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 458
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,691
Number of Sequences: 5004
Number of extensions: 48662
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -