Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N10
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical...    29   1.7  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   3.9  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF016414-1|AAG24023.2|  577|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.1 protein.
          Length = 502

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 492 YS*KYNAVSIQYTKMINTMFHMIIVVCDYSKDVR*KLIDL-----SFNFYT 355
           Y  KYN + I Y  +    FH +I   DY K +  K+ D+      FNFYT
Sbjct: 308 YLIKYNILEITYCSL---EFHKLIQSSDYHKKLSRKIFDIIDDICYFNFYT 355


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 202 SCCQIGCVDHEGNGIDV*MVTVVEQKGNGEVMVTY 306
           +CC IGC   + N I++  V   +  G  E  + Y
Sbjct: 196 NCCDIGCEKSKSNSIEIANVFKPDYAGGNEFSIKY 230


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 395 TSLE*SQTTIIM*NIVLIIFVYC--IETALYFYE*LFK 502
           TSL+  Q T +M  +V I+F +C     AL  +E +FK
Sbjct: 225 TSLQKEQNTTVMLLVVTILFGFCHFFSMALKLFESIFK 262


>AF016414-1|AAG24023.2|  577|Caenorhabditis elegans Hypothetical
           protein D1065.3 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 3   TRHLYTITFILHFIN--VTLSCSLSSWTFKVLVSVNKD 110
           TRH  + TF+ HF N    L  +L  W    L   ++D
Sbjct: 247 TRHTLSFTFLFHFSNSISVLKSTLPIWRRDALADTHRD 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,105,773
Number of Sequences: 27780
Number of extensions: 181197
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)