Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N09
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1446 + 26584117-26584329,26585799-26585981                       37   0.010
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    29   2.0  
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334     27   6.1  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     27   8.1  

>07_03_1446 + 26584117-26584329,26585799-26585981
          Length = 131

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = +3

Query: 150 VKDFDIPKSEEQCRAKVKELFLKNKHVTDIRVIDILVIKGQMELKESVNMWKQKGHIMSY 329
           + + D   +  Q R+ + +   KN+ VT+ +VID+L+ KG  EL       KQ+ H++  
Sbjct: 41  IYNLDDVVTPSQLRSTIAKEIRKNQGVTNPKVIDMLLFKGMEELGNITEHAKQRHHVIGQ 100

Query: 330 F---------KPTEEPKPKDFLSKFLSGN 389
           +            ++    DFL KF + N
Sbjct: 101 YVVGQKGLVQDMEKDQGSSDFLKKFYTSN 129


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 51   KKRKTSSSLQAQERLDQEY*TSIKHGTAKYPYLVKDFDIPKSEEQCRAKVKELFL---KN 221
            +K++ SS     E+L     T +KH     PYL  D D+   E + R   + L L   + 
Sbjct: 1271 EKKECSSGNTLLEKLIDFPTTFVKHTEVNGPYLFDDEDVGAWEAEARRWARTLLLVTSEE 1330

Query: 222  KHVTDIRV 245
            +H T I V
Sbjct: 1331 QHFTQIFV 1338


>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
          Length = 664

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -3

Query: 442 LAYLNFILFTWLKEITYSLPDKNLERKSLGFGSSVGLK*DIICPFCFHMFTDSLSSI*PL 263
           L +L  +L  +      +  D++    S G G   G   D++ PF FH+ +  +SS    
Sbjct: 7   LPHLTVLLVLFATSAAQAAADRSSSSSSCGGGERCG---DLLLPFPFHLNSSCVSS---- 59

Query: 262 MTSISITRMSVTC 224
            T+ S +R  ++C
Sbjct: 60  -TTNSSSRFRLSC 71


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 234 DIRVIDILVIKGQMELKESVNMWKQKG 314
           +I V+D+ V +GQ+ +  ++N W   G
Sbjct: 53  EIEVVDVSVRRGQLRIYSAINPWCYNG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,031
Number of Sequences: 37544
Number of extensions: 199075
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)