Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N09
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +3

Query: 168 PKS---EEQCRAKVKELFLKNKHVTDIRVIDILVIKGQMELKESVN 296
           PKS   E  C  K  E+F       D   +   V KGQ+ LKE  N
Sbjct: 476 PKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKEN 521


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 376 NLERKSLGFGSSVGLK*DI 320
           N+  + + FG SVGLK D+
Sbjct: 287 NIVVEGVSFGQSVGLKDDL 305


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 302 ETEGTYYVLF 331
           E EGTY++L+
Sbjct: 380 ENEGTYFILY 389


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 302 ETEGTYYVLF 331
           E EGTY++L+
Sbjct: 380 ENEGTYFILY 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,285
Number of Sequences: 438
Number of extensions: 2381
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)