Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N08
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   1.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   4.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   6.0  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   7.9  

>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 9   VKMNEVSAKELLVCPIIAITILESTI 86
           VK  E +  ELL+CPI  IT+   T+
Sbjct: 96  VKNEESTMSELLLCPICGITLESLTV 121


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 361 LDKIMYTNSSTRKCIIKVVKAFIHPISAPTLVSSLFATRARQL 233
           L+K+    +   + +I+V + F  P+S P LVSS       Q+
Sbjct: 183 LNKVDLPTADVDRTLIQVQQTFDIPMSKPILVSSKTGKNVEQI 225


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -2

Query: 475 PMTENYPMKNINENLIQYLKPMITYVITFFF*SQVSLTLDKIMYTNSSTRKCIIKVVKAF 296
           P+T+ Y   +  + LI  +      V +FF     S T D+I   NS    C+I ++   
Sbjct: 46  PVTDTYSYSSARQGLITGM----VNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVI 101

Query: 295 IHPISAPTLVSSLFA 251
           I   + P+ V  + A
Sbjct: 102 IQVTAVPSWVQIMVA 116


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 439 ENLIQYLKPMITYVITFFF*SQVSLTLDKIMYTNSSTRKCIIKVVKAFIHPISAPTLV 266
           E L QY+    T ++T      + LT   I+  +SS R C+ + ++ FI+ I  P L+
Sbjct: 79  EKLTQYVLSH-TSILTTSTALLLKLTSPLILDESSSVRDCLYRFLEKFIY-IMGPELL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,164
Number of Sequences: 5004
Number of extensions: 31749
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)