Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N07
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   3.3  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.4  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   5.8  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    24   7.7  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +1

Query: 55  IDNPVPIYI----YSFIITLY-TNVTFYISVL 135
           +DNPVPIY+     SF+  LY  N T Y + +
Sbjct: 460 LDNPVPIYLTPVNISFLSDLYLINNTLYFTAI 491


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 170 VYTTTLTRYHSRDYFT*RSMVYGIPGSIITGENLKLFLGSF 292
           V  T  TR+ S        M  GI GS+I   + KLFLG +
Sbjct: 37  VLQTLYTRFWSFKAHLGVDMELGIKGSLIHYRDDKLFLGEY 77


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 342 KNFLSDEWNIKLGASFKKEPRKSLRFSPVIIDPGIPY 232
           KN  +DE ++K  A +     KS R  P+I+   I Y
Sbjct: 395 KNVNADEASVKGAAFYGASLTKSFRVKPLIVQDIINY 431


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 272 KLFLGSFLNEAPNFIFH----SSDRKFFTNPRISISIVYKTTPRHLAS 403
           KL  G++LN  P F+ H     +D+ F +     I+   K  P   AS
Sbjct: 327 KLVRGAYLNSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPAS 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,870
Number of Sequences: 5004
Number of extensions: 32240
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)