Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N07
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626...    31   0.34 
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816...    30   0.79 
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845...    29   1.8  
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904...    27   4.2  
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258...    27   4.2  

>03_06_0143 +
           31962241-31962291,31962385-31962506,31962572-31962671,
           31962775-31962822,31963096-31963251,31963330-31963426,
           31963525-31963567,31963970-31964037,31964139-31964223,
           31964297-31964345,31964566-31964638,31964708-31964768,
           31965417-31965483,31965709-31965762,31965854-31965982,
           31966485-31966548,31966655-31966728,31966793-31966867,
           31966972-31967040,31967759-31967848,31968014-31968121,
           31968251-31968298
          Length = 576

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 384 VVLYTIEIEILGFVKNFLS-DEWNIKLGASFKKEPRKSLRFSPV 256
           + +Y   I + GF+    S D+W ++LG S   + RKSL  S V
Sbjct: 497 LAIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRV 540


>06_01_1040 +
           8163654-8163704,8163814-8163935,8164011-8164092,
           8164166-8164213,8164516-8164671,8164747-8164843,
           8164942-8164984,8165375-8165442,8165533-8165617,
           8165698-8165746,8165968-8166040,8166119-8166179,
           8167114-8167180,8167400-8167453,8167537-8167665,
           8168192-8168255,8168366-8168439,8168523-8168576,
           8168696-8168764,8169394-8169483,8169656-8169763,
           8169876-8169923
          Length = 563

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 378 LYTIEIEILGFVKNFLS-DEWNIKLGASFKKEPRKSLRFS 262
           +Y   I + GF+    S D+W ++LG S   + RKSL  S
Sbjct: 486 IYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHAS 525


>03_03_0129 -
           14684003-14684123,14684205-14684323,14684406-14684501,
           14684605-14684712,14684974-14685060,14685135-14685338,
           14685429-14685488,14686096-14686264,14686400-14686473,
           14686586-14686897,14687054-14687212
          Length = 502

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 52  CIDNPVPIYIYSFIITLYTNVTFYISVLKYLL-RVDII*RCIYNNFNPLSFERLFYVAIN 228
           CID+     I    +TL  ++  + S  KY+    D+I  CI      +S  R+++  + 
Sbjct: 292 CIDSTFASPINQKALTLGADLVIH-SATKYIAGHNDVIGGCISGRDELVSKVRIYHHVVG 350

Query: 229 GIRNPRIYY 255
           G+ NP   Y
Sbjct: 351 GVLNPNAAY 359


>08_02_0662 +
           19789406-19789546,19789646-19789779,19790272-19790476,
           19791233-19791367,19792117-19792746,19793180-19793356,
           19795175-19795198
          Length = 481

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 342 KNFLSDEWNIKLGASFKKEPRKSLR 268
           +NF+ D  N K+GA+  KE RK L+
Sbjct: 160 ENFVGDRDNSKIGATHVKERRKRLK 184


>05_01_0329 -
           2580083-2580115,2580787-2580864,2580986-2581078,
           2581209-2581326,2583350-2583440,2585167-2585207,
           2585854-2585981,2586078-2586353,2587318-2587472,
           2587557-2587700,2587991-2588567
          Length = 577

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 187 NPLSFERLFYVAINGIRNPRIYYNG 261
           NP   ER  YV I+G   P  YYNG
Sbjct: 364 NPHMNERRHYVYIDGFSAPPEYYNG 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,582
Number of Sequences: 37544
Number of extensions: 166915
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)