Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N07
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.    27   3.8  
Z81037-2|CAB02746.1|  125|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical
           protein H06O01.1 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 184 FNPLSFERLFYVAINGIRNPRIYYNGREP*AFSWFLFKRST 306
           F    F  LF++  N   NP  Y  GRE   F  F+ K ST
Sbjct: 430 FEVRGFPTLFWLPKNAKSNPIPYNGGREVKDFVSFISKHST 470


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 65  RFRYTSTHSLLHYIRTLHFIFQY*NIYYVLILYSDVYTTTLTRYHSRDY 211
           RF+  ST   L + +     F + +IY+V  L+   Y++ L + H  D+
Sbjct: 16  RFQEPSTRRALCFHQHCRSRFSFLHIYFVSSLHISTYSSFLNKRHKCDH 64


>Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical
           protein C29F4.2 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 342 KNFLSDEWNIKLGASFKKEPRKSLRFSP 259
           K  L  +++ KLGA F+K   KSL F+P
Sbjct: 419 KQTLEAKFSNKLGAMFQKRHSKSLTFTP 446


>AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 184 FNPLSFERLFYVAINGIRNPRIYYNGREP*AFSWFLFKRST 306
           F    F  LF++  N   NP  Y  GRE   F  F+ K ST
Sbjct: 430 FEVRGFPTLFWLPKNAKSNPIPYNGGREVKDFVSFISKHST 470


>Z81037-2|CAB02746.1|  125|Caenorhabditis elegans Hypothetical
           protein C17E4.4 protein.
          Length = 125

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 330 SDEWNIKLGASFKKEPRKSLRFSPVI 253
           SD W  KL +  KK P   L F+PV+
Sbjct: 62  SDYWEDKLDSFNKKHPFLMLHFAPVV 87


>U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical
           protein F47F2.3 protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 309 LGASFKKEPRKSLRFSP 259
           +G    +EPRKS+RFSP
Sbjct: 85  MGQPVNEEPRKSIRFSP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,171
Number of Sequences: 27780
Number of extensions: 169751
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)