Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N06
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    29   0.65 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   2.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.6  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    26   4.6  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 386 KEKCLNKNSCFWYSHAAPSLP 448
           +E+CL+ N+C W     PS P
Sbjct: 60  EERCLSANTCKWVDEVVPSAP 80


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 576 SIFNPPVFAILSVFRLV*EVSLV---VFICLYV--ELIWVLL 466
           S+F+ P  AI ++F +   VSL+   VF+C Y+   ++W  L
Sbjct: 152 SVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPL 193


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 387 RKNA*TRTPAFGIRMQLPRCLRRVQSTTRPRSV 485
           R+NA  +T AFG+R+  P   ++ +S  R   +
Sbjct: 150 RQNAINKTRAFGMRLWKPALYKKFRSINRDADI 182


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 418 LVFACSSLAALDGYSPQQDPDQFHIQTDEHDERYFLYQTKNGQ 546
           +VF    +  +DG S   +   FH  T  H  +   Y TK+G+
Sbjct: 201 IVFTEDIINVIDGKSEDDESLCFHFATITHYGQLRFYDTKHGR 243


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 422 YSHAAPSLP*TGTVHNKTQISSTYKQMNTTSD 517
           Y H  P LP +  V   ++   T ++ + TSD
Sbjct: 136 YKHILPDLPQSSEVDRNSETEGTREENSNTSD 167


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 380  IFKEKCLNKNSCFWYSHAAPSLP*TGTVHNKTQISSTYKQMNTTSDTSY 526
            I K   LN NS  WY+    S+    T       +ST++  + T  + +
Sbjct: 3848 IMKTTSLNSNSYKWYNSTTQSVYYNATSSTVPWSNSTFRNTSNTMTSRF 3896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,893
Number of Sequences: 5004
Number of extensions: 49155
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)