Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N06
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF440516-1|AAL34104.1|  184|Caenorhabditis elegans SKR-15 protein.     29   3.2  
AF099917-7|AAC68782.1|  184|Caenorhabditis elegans Skp1 related ...    29   3.2  
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical ...    28   4.2  

>AF440516-1|AAL34104.1|  184|Caenorhabditis elegans SKR-15 protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 409 LLLLVFACSSLAAL-DGYSPQQDPDQFHIQTDEHDER 516
           + LL + C  +A L  G SP++    F I TDE DE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164


>AF099917-7|AAC68782.1|  184|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 15 protein.
          Length = 184

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 409 LLLLVFACSSLAAL-DGYSPQQDPDQFHIQTDEHDER 516
           + LL + C  +A L  G SP++    F I TDE DE+
Sbjct: 128 MTLLTYCCKFIAGLAKGMSPEEMRVFFCIPTDEEDEK 164


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 423 IRMQLPRCLRRVQSTTRPRSVPHTNR*TRRAILPIPNEKRTISQR 557
           +R+   RCL++    + P ++P T   T  A  P P   R +  R
Sbjct: 108 LRVDSNRCLQKFSEFSAPETIPETLEETVPATAPEPERSRKLVNR 152


>AL032630-5|CAA21569.2|  165|Caenorhabditis elegans Hypothetical
           protein Y62H9A.5 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 412 LLLVFACSSLAALDGYSPQQDPDQFHIQTDEHDERYFLYQTKNGQYRKDRR 564
           L+L  AC ++ A DGY    DP             Y +Y  ++   R+ RR
Sbjct: 4   LILTVACIAMVAADGYGAASDPSYPAPGPSYGGGGYPIYSDEDSDSREHRR 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,731
Number of Sequences: 27780
Number of extensions: 271305
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)