Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N05
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 109 9e-25
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 100 4e-22
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 40 9e-04
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 40 9e-04
AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical ... 31 0.53
Z93778-3|CAB07846.1| 446|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 27 8.7
Z46793-1|CAA86770.1| 367|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 27 8.7
AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA s... 27 8.7
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 109 bits (262), Expect = 9e-25
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Frame = +2
Query: 8 VSEEGKMENV-ENFDNYQRYDCRQMXXXXXXXXXXXXXXXPH-AMTLPICSRSGDVIEHL 181
+ EGKM N E+FD R++ R+ H + ICSR+GD+IE
Sbjct: 286 IDAEGKMTNSGEDFDGMDRFEAREKVIQKLSELGNYNGLMKHEGAQVNICSRTGDIIEPR 345
Query: 182 PKEQWFLSCSDMNERAANLVKNNSLKIQPDRFIKHWLDWSKDDKDWCISRQLWWGHQIPA 361
EQWFL C DM R+A+ +K+ +++ P+ DW ++ + WC+SRQLWWGH+IPA
Sbjct: 346 LTEQWFLDCKDMFARSADAIKSGKIEVFPEYQSHRLADWFENQEPWCLSRQLWWGHRIPA 405
Query: 362 YKCNANKDIIWIAANDETSAKLGASKYLRSVPE 460
Y N W+ DE A+ ++ P+
Sbjct: 406 Y--NVPGQSKWMVTTDEEEARRELGDKMQQDPD 436
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 100 bits (240), Expect = 4e-22
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +2
Query: 8 VSEEGKM-ENVENFDNYQRYDCRQMXXXXXXXXXXXXXXXPHAMTLPICSRSGDVIEHLP 184
++++G + + F +R+D R + M +P CSRS DVIE +
Sbjct: 397 ITDDGLISQGCGEFSGMKRFDARTAVIEALKEKGLYRGKEDNPMVVPTCSRSKDVIEPIL 456
Query: 185 KEQWFLSCSDMNERAANLVKNNSLKIQPDRFIKHWLDWSKDDKDWCISRQLWWGHQIPAY 364
K QW++ C+ M E+A V N L+I P+ W W + +DWCISRQLWWGH+IPAY
Sbjct: 457 KPQWYVKCAHMAEKAVAAVANGDLQIIPEFHKATWNRWLESSRDWCISRQLWWGHRIPAY 516
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +2
Query: 143 PICSRSGDVIEHLPKEQWFLSCSDMNERAANLVKNNSLKIQPDRFIKH--WLDWSKDDKD 316
P C RS + + WF++ + R L+ NN F+K + +W +D +D
Sbjct: 399 PFCWRSDTPLLYKAVPSWFINVETLIPR---LLANNDETYWVPAFVKEKRFANWLRDARD 455
Query: 317 WCISRQLWWGHQIPAYKCNANKDIIWIAA 403
W +SR +WG I + ++++ + +
Sbjct: 456 WAVSRNRFWGTPINLWVSEDGEEVVCVGS 484
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 39.9 bits (89), Expect = 9e-04
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +2
Query: 128 HAMTLPICSRSGDVIEHLPKEQWFLSCSDMNERAANLVKNNSLKIQPDRFIKHWLDWSKD 307
H + P R+ + EQWF+ ++ +RA+ ++ + S+
Sbjct: 445 HVHSYPYDWRTKKPVIIRSSEQWFIDVDEIGKRASMMLDDISVAAGDSDLRASLKQLVTT 504
Query: 308 DKDWCISRQLWWGHQIPA 361
K WCISRQ WG IPA
Sbjct: 505 RKSWCISRQRVWGTPIPA 522
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 39.9 bits (89), Expect = 9e-04
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +2
Query: 128 HAMTLPICSRSGDVIEHLPKEQWFLSCSDMNERAANLVKNNSLKIQPDRFIKHWLDWSKD 307
H + P R+ + EQWF+ ++ +RA+ ++ + S+
Sbjct: 445 HVHSYPYDWRTKKPVIIRSSEQWFIDVDEIGKRASMMLDDISVAAGDSDLRASLKQLVTT 504
Query: 308 DKDWCISRQLWWGHQIPA 361
K WCISRQ WG IPA
Sbjct: 505 RKSWCISRQRVWGTPIPA 522
>AF101310-1|AAC69216.2| 765|Caenorhabditis elegans Hypothetical
protein C39F7.2 protein.
Length = 765
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 159 DRLHIGNVIACGLTAFNSPNLANFSRSICLQS 64
D LH V A + ++NS + +S SICLQ+
Sbjct: 559 DGLHFNTVYAARVKSYNSAGESEYSESICLQT 590
>Z93778-3|CAB07846.1| 446|Caenorhabditis elegans Hypothetical
protein C31H5.6 protein.
Length = 446
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 373 ITFISRNLMAPPQLS*YTPIFIIFRPIEPMFDES 272
I F R L +PP + +T +FI+ P++P+ + S
Sbjct: 411 INFFKRKLGSPPPMPDWTRLFIVNAPLKPIENRS 444
>Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical
protein ZK524.3b protein.
Length = 828
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 314 DWCISRQLWWGHQIPAYKCNANKDI 388
DW +SRQ WG IP + K +
Sbjct: 359 DWVVSRQRGWGTPIPMIQTKDGKRV 383
>Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical
protein ZK524.3a protein.
Length = 859
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 314 DWCISRQLWWGHQIPAYKCNANKDI 388
DW +SRQ WG IP + K +
Sbjct: 390 DWVVSRQRGWGTPIPMIQTKDGKRV 414
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 293 DWSKDDKDWCISRQLWWGHQIPAYKCN 373
DW D+ CIS QL HQ +KC+
Sbjct: 26 DWKLDETPKCISSQLSL-HQTEGFKCH 51
>Z46793-1|CAA86770.1| 367|Caenorhabditis elegans Hypothetical
protein C56G7.2 protein.
Length = 367
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 176 HLPKEQWFLS--CSDMNERAANLVKNNSLKIQPDRFIKHWLDWSKDDKDW 319
+L W S +++ + A L++NN + + FIK WL S DK W
Sbjct: 233 YLQHADWITSEDLLNLDVQTAMLIENNLTEQDLNAFIKQWLR-SDSDKLW 281
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
C08B11.3 protein.
Length = 1244
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 287 WLDWSKDDKDWCISRQLWWGHQIPAYKCNANKDIIWIAANDETSAKLGASKYLRSVPE 460
WL S+ + +S+ L HQ PA + K + + ++ S+ G+S L +VP+
Sbjct: 1108 WLALSRLESAHALSQLLSELHQAPAAEEEQQKMLSEVPSSASLSSMAGSSSQLPTVPD 1165
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 293 DWSKDDKDWCISRQLWWGHQIPAYKCN 373
DW D+ CIS QL HQ +KC+
Sbjct: 26 DWKLDETPKCISSQLSL-HQTEGFKCH 51
>AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA
synthetase (mitochondrial)protein.
Length = 828
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 314 DWCISRQLWWGHQIPAYKCNANKDI 388
DW +SRQ WG IP + K +
Sbjct: 359 DWVVSRQRGWGTPIPMIQTKDGKRV 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,530
Number of Sequences: 27780
Number of extensions: 201809
Number of successful extensions: 519
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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