Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N04
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    30   0.19 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    28   1.0  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   1.8  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.4  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   5.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   5.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +2

Query: 215 RIPYTTKALPSIGENRGDVVDPHIMNDLLVSGYKMFKMFRGPFKSISHED 364
           +IP T+    +  E  GD++DP  +  L VSG  ++ +   PFKS  +E+
Sbjct: 6   KIPSTSFEHENTFELSGDLLDPEELKSLGVSGRIIYVLRHLPFKSSINEE 55


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 244 WQCFCGIWYPHYQYHPEVFLRLVKYIP 164
           W+   G W PH+  + E F+  V Y+P
Sbjct: 40  WEQINGEWTPHFYENHEGFVNCVCYVP 66


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 221 PYTTKALPSIGENRGDVVDPHIMNDLLVSGYKMFKMF-RGPFKSISHEDIYTIC-----D 382
           P+T   L  IGE+    V    + D+LV   K+ K+  +  F +   E +YT C     D
Sbjct: 150 PFTKSFLSKIGESNTITVKGMPLADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLALEDD 209

Query: 383 NFFTPYISSR 412
           + +T ++S++
Sbjct: 210 DAYTNFVSAQ 219


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 350 ISHEDIYTICDNFFTPYISSRNLTNDISDVIQGINYLPLDKN 475
           I +  I TI D+FF  Y  +  L N + DV+Q +   P+DK+
Sbjct: 521 IQNNVIPTILDHFFD-YPWNNFLHNVVYDVVQQVLNAPMDKD 561


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 GPLNILNILYPDTNKSFIICGST 271
           GP++ L +L  D  KSF++C  T
Sbjct: 343 GPIHDLLVLKNDIEKSFLVCAGT 365


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 334 PEHLEHF-ISRY*QIIHYMWVYNISSIFSNRWQC 236
           P  L HF +S Y Q ++ +   N+S  F +R QC
Sbjct: 210 PGFLTHFSLSNYQQHLYQVLTQNVSLRFCSRLQC 243


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 296 LLVSGYKMFKMFRGPFKSISHEDIYTICDNFFTPYISS 409
           L++S + +  + R PF S+S   + TIC+    P++ +
Sbjct: 526 LIISSFHISAVKRSPFSSLSPVILLTICN--IAPFVEN 561


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 287  MNDLLVSGYKMFKMFRGP-FKSISHEDIYTICDNFFTPYISSRNLTNDISDVIQ 445
            M D   SG K+  +     F S+ H  ++   D+   PYI+   LTN +S+  Q
Sbjct: 1088 MTDFNNSGSKLMHVLHARIFISVLH--LWRSADDLHLPYITRALLTNVLSNCYQ 1139


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 3   TRQKARN*KEYFFIIHLKLLMILRKCKLGYVKLSLNLC*HSHPNLVKLCKHKQ 161
           T   + N +E F  +  +   ++ +    Y   +++LC    PNLV+ C++ Q
Sbjct: 86  TLSSSSNERESFENLIFEHACLIYRLACTYHTTAISLCNEKPPNLVQACQYFQ 138


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +2

Query: 413 NLTNDISDVIQGINYLPLDKNSFFKVVCFIDI 508
           ++TN+I D ++ +  +P+D++     VC +++
Sbjct: 116 HVTNEIQDWVERVARIPVDQSGEEPDVCIVEL 147


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
 Frame = +2

Query: 272 VDPHIMNDLLVSGYKMFKMFRGPFKSI---SHED-IY------TICDNFFTPYISSRNLT 421
           VD HIM+D  ++G  +F +    F S+   SH   IY      ++  +F    +S++NL 
Sbjct: 85  VDVHIMDDTDMAGPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLF 144

Query: 422 NDISDVIQGINYLPLDKNSFFK-VVCFIDILEVTFPDFQCI 541
              +  + G + LPL   +FFK +  F  I         CI
Sbjct: 145 FTRTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAALACI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,875
Number of Sequences: 5004
Number of extensions: 56290
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)