Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N04
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 56 2e-08
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 31 0.45
11_06_0338 + 22479804-22480651,22480764-22482954 30 1.0
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246... 28 5.5
02_01_0259 - 1719673-1720857 28 5.5
10_07_0192 + 13953721-13954128 27 7.3
06_03_0379 - 20074459-20074490,20075023-20075845 27 9.7
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 56.0 bits (129), Expect = 2e-08
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Frame = +2
Query: 5 EAEGEELKRILFYHPSQTTHDTQKMQVGLCEAVIKF---------MLT------------ 121
+ EG+EL +ILF+HP+ Q +GLCE +I F +LT
Sbjct: 23 QQEGQELDKILFFHPTDCPILLQLSVIGLCEGIITFARFAVLLHPLLTRIPLLFVLLLGS 82
Query: 122 ----FSPEP-CEALQTQTKRYIFYQPEKDFWMVLVVRIPYTTKALPSIGENRGDVVDPHI 286
FSP+ CE ++++ ++FYQ E D WMVLVV ++ G +G + + H
Sbjct: 83 SRRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVVEKNKDIESTWRCGALQGILKEVH- 141
Query: 287 MNDLLVSGYKMFKMFRGPFKSI-----SHEDIYTICDNFFTPYISSRN 415
+F MF GP +++ S E FFT Y+S N
Sbjct: 142 ---------SLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFN 180
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 341 FKSISHEDIYTIC-DNFFTPYIS---SRNLTNDISDVIQGINYLPLDKNSF 481
F + H DIYT+C D F P + S LT + D + Y P DK SF
Sbjct: 392 FSIMRHIDIYTLCLDRFLYPRKTRGDSLTLTGMLMDADESSAYQPDDKGSF 442
>11_06_0338 + 22479804-22480651,22480764-22482954
Length = 1012
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +2
Query: 308 GYKMFKMFRGPFKSISHEDIYTICDNFFTPYISSRN-----LTNDISDVIQGINYLPLDK 472
GY +F +G ++++ ED+ IC F Y+S RN L I ++ + L + +
Sbjct: 582 GYLVFLDLQG-WENLKDEDLLQICKMFMLSYLSVRNTRVSKLPPQIKELC-NLKALDVSQ 639
Query: 473 NSFFKV---VCFIDILEV 517
FK+ VC ++ LE+
Sbjct: 640 THIFKIPSEVCELEYLEI 657
>02_05_1221 -
35023734-35023868,35024002-35024217,35024349-35024675,
35024845-35025218,35025560-35025647,35025767-35025910,
35026053-35026178,35026264-35026412,35026539-35026644,
35026757-35026900,35027018-35027194,35027304-35027453,
35027570-35027788
Length = 784
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 368 YTICDNFFTPYISSRNLTNDISDVIQGINYLPLDKNSFFKVVCFIDILEVTFPDF 532
+ I D + PYI+ R LT++ + + Y K F FID+++ F +F
Sbjct: 547 FAIVDEAY-PYIAQRLLTDESPRLRSALRYTIYGKTGVFDAERFIDVMQ-AFENF 599
>02_01_0259 - 1719673-1720857
Length = 394
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 318 ILYPDTNKSFIICGSTTSPLF-SPIDGNAFVVYGILTTNTIQKSFSGW 178
+LY DTNK + G T + LF +D + + G + T ++ SGW
Sbjct: 323 LLYDDTNKDRRVVGRTVALLFRDTVDISGTPIVGFMPTG---RASSGW 367
>10_07_0192 + 13953721-13954128
Length = 135
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -3
Query: 288 IICGSTTSPLFSPIDGNAFVV 226
+ICGSTTSPL P G+A VV
Sbjct: 28 LICGSTTSPL--PCAGSAAVV 46
>06_03_0379 - 20074459-20074490,20075023-20075845
Length = 284
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 236 ALPSIGENRGDVVDPHIMNDLLVSGYKMFKMFRGPFKSISHEDIYTICDNFFTPYISSRN 415
A+ + N VV I+ D+L GY+ + + P+ I + TI P I
Sbjct: 108 AVDAFNLNGPSVVHKRILKDMLTLGYEQMYIVQSPWGDILIVNRMTIIPRNGNPEIEETE 167
Query: 416 L-TNDI 430
L T+DI
Sbjct: 168 LYTSDI 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,815
Number of Sequences: 37544
Number of extensions: 303952
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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