Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N04
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    41   7e-04
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    29   2.2  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    29   2.2  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   3.8  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
 Frame = +2

Query: 11  EGEELKRILFYHPSQTTHDTQKMQVGLCEAVIKF----MLTFSPEPCEALQ--------- 151
           EGEE  R++++HP     + Q    G  EAV+ F    + T   E  E +          
Sbjct: 45  EGEEHNRVMYFHPKGEQLERQTEITGFAEAVVNFTENFLSTSRREISERISENEDGFDFR 104

Query: 152 ---TQTKRYIFYQPEKDFWMVLVVRIPYTTKALPSIGENRGDVVDPHIMNDLLVSGYKMF 322
              TQ   +++ + E D + +L V I   +K L  + +    +  P I + +L   YKMF
Sbjct: 105 TVTTQRTEHVYIRTEDDQF-ILGVSI---SKQLSLVSDY--PLFQPAIRS-ILSDAYKMF 157

Query: 323 KMFRGPFKSISH---EDIYTI---CDNFFTPYISSRNLTN-DISDVIQGINYLPLDKNSF 481
           +MF G F S      +DI       D FF+ YI    +    + D + G+ +L +    +
Sbjct: 158 RMFFGTFSSFIKNVPDDIPKFKERLDFFFSKYIPLLKVHKMPLLDHLGGVEFLRMSGPLY 217

Query: 482 FKVVCFIDILEVTF 523
             VV  +  L   F
Sbjct: 218 LNVVSLLSELREEF 231


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 390 LHHTYHREISQMTSQMLYKVLITCLWIKIHFSKLCVS 500
           +H+T +RE+S  TS  ++  L + L + +HF  +C S
Sbjct: 633 IHYTKYRELSDPTSVPVFPTLCS-LSVSLHFPYVCFS 668


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 390 LHHTYHREISQMTSQMLYKVLITCLWIKIHFSKLCVS 500
           +H+T +RE+S  TS  ++  L + L + +HF  +C S
Sbjct: 633 IHYTKYRELSDPTSVPVFPTLCS-LSVSLHFPYVCFS 668


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 390 LHHTYHREISQMTSQMLYKVLITCLWIKIHFSKLCVS 500
           +H+T +RE+S  TS  ++  L + L + +HF  +C S
Sbjct: 633 IHYTKYRELSDPTSVPVFPTLCS-LSVSLHFPYVCFS 668


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 20  ELKRILFY--HPSQTTHDTQKMQVGLCEAV 103
           ++K I+ Y  H S+ TH T K+Q  LCE +
Sbjct: 585 QVKPIVIYADHTSEGTHSTLKLQERLCEVI 614


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 257 NRGDVVDPHIMNDLLVSGYKMFKMFRGPF--KSISHEDIYTICDNFFTPYISSRNLTNDI 430
           N+G+    H + D LV   K+ K   G      +++E+I     N    YI  +NL ND+
Sbjct: 281 NKGEYNKIHAILDELVRQKKIKKKDLGVIYLNIVNNENI----KNTPKHYIHIKNLENDV 336

Query: 431 SDVIQGINYLPLDKNSFFK 487
              I  I YL +DKN   K
Sbjct: 337 LYFISSIRYL-MDKNISLK 354


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +2

Query: 275 DPHIMNDLLVSGY-KMFKMFRGPFKSISHEDIYTICDNFFTPYISSRNLTNDISDVIQ-- 445
           DP++  D  V  Y KM +  R   K       Y  C    T ++  R +       +Q  
Sbjct: 39  DPYLSADRKVVVYEKMIEALRNMDKYCKDRRFY--CKRPETRHVDCRRVLRGDKAYLQSL 96

Query: 446 -GINYLPLDKNSFFKVVC 496
            GIN +PL +N F  + C
Sbjct: 97  TGINRIPLIENPFLNLTC 114


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 347 SISHEDIYTICDNF--FTPYISSRNLTNDISDVIQGINYLPLDKN 475
           SI  +D+     +F   TP   S   T+ +S +++GIN L LDKN
Sbjct: 115 SIKSDDLIPELLHFGTLTPTQISAINTDKLSKIVEGINDLKLDKN 159


>Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical
           protein F55H2.5 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -1

Query: 311 IQILTNHSLYVGLQH-LLYFLQ*MAMLLWYMVSSLPIPSRSL----SQVGKIYTFLFV 153
           + +++ HS ++GL   +LYF Q +   + Y    +PIP R L     Q+  +  F+FV
Sbjct: 133 VNLVSLHS-WIGLSVVILYFAQYIVGFITYFFPGMPIPIRQLVMPFHQMFGVLIFIFV 189


>U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical
           protein F58F9.4 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 307 RY*QIIHYMWVYNISSIFSNRWQCF 233
           RY Q I +   YN++    + WQCF
Sbjct: 204 RYEQAIFFSKTYNLTKNAKSNWQCF 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,999
Number of Sequences: 27780
Number of extensions: 304885
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)