Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N02
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   0.54 
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   5.0  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    25   6.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.8  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 19/95 (20%), Positives = 42/95 (44%)
 Frame = +2

Query: 221 YKKRFNSEILCAALWGVNLLIGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILV 400
           YK++ ++     ALW  NL    E    + +R  + + ++  ++R F+++      ++  
Sbjct: 472 YKRKLDNAKAINALWAENLKTVVEEQDQIEERYHRSEAHRRRTKRAFRRL----AASLKK 527

Query: 401 TVSGKKNRVRVYYLSWLKSKILRTDGLSDQAERRN 505
             S K N++ ++Y     S    +   +D  E  N
Sbjct: 528 RPSDKDNKLHIHYDDGAMSSTSYSTDFTDDEEETN 562


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 SEILCAALWGVNLLIGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILVTVS 409
           S++    L+   L++G +NG +L+  +  GK+    +  + +   V    + L+T S
Sbjct: 200 SQLNALCLYQSKLIVGRDNGTVLVLDTSDGKILHEFTAHKKRVKSVYPVDDYLITAS 256


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 429 ESIISVGSSPKYYAPMVLA 485
           ESIIS+GSS   Y P+ +A
Sbjct: 801 ESIISMGSSASSYVPLEIA 819


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 411 PDTVTSIFCPSNTSICWKRRRDIN--WYTFP*PDRSSSIKPFSVPI-SKFTPHRAAHNIS 241
           PD V+ +FC S+TS   ++    +  W       +S+  +  S+P+ S        +NI 
Sbjct: 26  PDDVSRLFCKSSTSSATRKHDPFHKLWDRLQPKAQSTIQRTSSLPVPSSSNFKERLNNIG 85

Query: 240 ELKR 229
            LKR
Sbjct: 86  GLKR 89


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 304 AARSVRSREGVPVDISTPLPADGSVGRAEYTRDGIREKESRTSLL 438
           A R V++ EG P++I     A  S     + +   R+KES + +L
Sbjct: 656 AKRVVKNDEGEPIEIIAEYDASSSKKPKTFIQWVSRDKESNSPVL 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,103
Number of Sequences: 5004
Number of extensions: 35111
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)