Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N02
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1216 + 27077570-27078313                                         29   2.9  
11_04_0022 - 12361860-12362087,12362343-12362580,12363146-12363246     28   3.8  
08_02_0121 + 12791770-12792037,12794012-12794141,12794159-12794210     28   3.8  
01_06_0940 - 33193925-33194743                                         28   5.1  
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350...    27   6.7  
05_01_0172 + 1194563-1194934,1196051-1196120,1196769-1196833,119...    27   6.7  

>12_02_1216 + 27077570-27078313
          Length = 247

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 66  RCFCCKERNCCW 31
           RCF C ER CCW
Sbjct: 203 RCFGCGERACCW 214


>11_04_0022 - 12361860-12362087,12362343-12362580,12363146-12363246
          Length = 188

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 433 DSYAILFPGYRHEYILPFQHFHL 365
           D    LFPGY +E  LP   FHL
Sbjct: 70  DYLIFLFPGYANEITLPNPEFHL 92


>08_02_0121 + 12791770-12792037,12794012-12794141,12794159-12794210
          Length = 149

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 421 ILFPGYRHEYILPFQHFHL 365
           ILFPGY +E  LP   FHL
Sbjct: 5   ILFPGYTNEIPLPNPEFHL 23


>01_06_0940 - 33193925-33194743
          Length = 272

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 389 SALPTLPSAGSGVEISTGTPSLDRTDRAALNRFQCRLVNSPPIEQRIIFQS 237
           +A P+ PSAG G ++S  +P+L     AA        ++  P   R  F S
Sbjct: 2   AANPSSPSAGGGGDVSASSPTLPPVRLAAAQAASAAAIH--PTSPRYFFSS 50


>11_04_0281 +
           15733505-15733647,15734366-15734443,15734835-15735077,
           15735868-15736012,15736234-15736293,15736376-15736471,
           15736651-15737067,15737824-15737964,15738043-15738213,
           15738394-15738651,15738741-15738889,15739060-15739557,
           15740147-15740420,15740631-15740696,15740891-15741057,
           15741413-15741497,15741673-15741732
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 306 SIKPFSVPISKFTPHRAAHNISELKRFLYLRISGVSED 193
           S +PF   +S+F P  + +N  + +  L   + G+ ED
Sbjct: 417 SPRPFKTKLSRFAPQFSGYNQHDSQELLAFLLDGLHED 454


>05_01_0172 +
           1194563-1194934,1196051-1196120,1196769-1196833,
           1197608-1197958
          Length = 285

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 227 SYICVFPVCPRTGRARWGLRSHSRDSRAGRHCPPTP 120
           +Y      C R GRA   +R  +RD   G   P TP
Sbjct: 77  AYWATISACLRDGRACAAMRRFARDPNTGMLVPETP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,626
Number of Sequences: 37544
Number of extensions: 247952
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)