Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N01
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.23 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   0.92 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   0.92 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    27   1.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   4.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   4.9  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   4.9  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   6.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 314 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKTWTQCATLN 472
           ++T +   S S  LS + SC        TGN   P+    PPT + T   T N
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426



 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 314 STTGAMARSYSMCLSPAVSCCPVGRCRWTGNPPRPILAFSPPTKT 448
           ++T +   S S   S + SC        TGN   P+    PPT T
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 172 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 318
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 494 RISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSN 342
           + S     + L  V  S+L +  +VL L   P     P G R  PA++TSN
Sbjct: 69  KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 483 HEYLFKVAHCVHVFVGGENAS 421
           H  LF V+H V  FV GENA+
Sbjct: 65  HSGLFDVSHMVQWFVRGENAT 85


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 500 YRRISFTNTCSKLRIVSMSSLAEKMQVLVLGD 405
           Y+R    N C +L + S+S L +K Q  +L D
Sbjct: 119 YQRTRVENVCKRLGLKSLSFLWQKDQEKLLND 150


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 209 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 349
           S+  T SAT  S   S+ A  ++  ++S    + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 199 HLFFWSLSVDPIILVFLPSDSYNILLLTGY 110
           ++  WSL + P+I  F+PS  +  +   G+
Sbjct: 181 YVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 139 SQKVEKPVLSGQRIKTRKRDE 201
           +Q++++PV  G  IK  K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,913
Number of Sequences: 5004
Number of extensions: 39359
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)