Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_N01
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 70 1e-12
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 0.92
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 0.92
06_01_0627 - 4567304-4567521,4567649-4567727,4567827-4568165,456... 30 1.2
07_03_0634 + 20125242-20125688 29 2.1
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 28 4.9
01_07_0280 + 42452993-42453337,42453778-42453981 27 6.5
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 8.6
03_05_0600 + 26021863-26022469,26022562-26022992 27 8.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 8.6
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 69.7 bits (163), Expect = 1e-12
Identities = 39/92 (42%), Positives = 53/92 (57%)
Frame = +1
Query: 106 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 285
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 286 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG 381
K ++S S L++ RYG+ F+V+ GG PG
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQPG 143
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 0.92
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 199 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 348
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 172 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 336
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>06_01_0627 -
4567304-4567521,4567649-4567727,4567827-4568165,
4568202-4568239,4568462-4568837
Length = 349
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 183 LYPLTR*YWFFYLLTHTIYCY*QVM*EPLTPFASSLGLRL 64
L PLT+ WF ++ I+C Q++ PL+ S G L
Sbjct: 105 LKPLTKELWFATMILFPIHCLGQIIKSPLSKIVVSYGASL 144
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 185 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 355
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 356 SPAVSCCPVGRCRWTG 403
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 148 PSDSYNILLLTGYVGAFNSFCEFSRTAPVQKRKKR 44
PS+S+ L+ GY G F+S +R V ++KK+
Sbjct: 349 PSNSFANLIYVGYPGDFDSAFTTTRKRRVDRKKKQ 383
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 426 ASIGLGGFPVHRHRPTGQQETAGDKHIEYDLAIAP 322
A++G GG+ H HR +Q + G K +Y A P
Sbjct: 141 AAVGAGGYAYHEHREQ-KQASYGAKEQQYGYARMP 174
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 288 IPRFGWLETRLPALWRGHIRCAYRRRSPAAR 380
I RFG + P+ +RG+ + R RSPAAR
Sbjct: 45 ISRFGAWYSGSPSPYRGNPKSRSRSRSPAAR 75
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 401 PSIDTDPPGSRRPPA 357
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 362 AVSCCPVGRCRWTGNPPRPILAFSPPTKT 448
A C P GR G PP P+ PP ++
Sbjct: 24 ASKCWPFGRGGGDGEPPPPLPPMEPPKRS 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,973
Number of Sequences: 37544
Number of extensions: 299188
Number of successful extensions: 1079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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