Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_N01
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    28   4.4  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   7.7  

>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 288 IPRFGWLETRLPALWR-GHIRCAYRRRSPAARWVGVDG 398
           I R G LE  LP  W+ G IR   R+ S  A W   DG
Sbjct: 124 IARLG-LEKMLPTGWKYGTIRVGLRKNSQGAPWYNTDG 160


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 205 LSHLFFWSLSVDPIILVFLPSDSYNILLLTGYVGAF 98
           L +L FW+L +D I  VFL    +  +   GY+G F
Sbjct: 72  LLNLKFWTLLIDLIYTVFLIPFVFYPIFAMGYIGIF 107


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 491 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 357
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 491 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 357
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 491 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 357
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 618 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 491 ISFTNTCSKLRIVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPA 357
           I  +N    + + S ++++ +M+   +GD+P   + PP   + P+
Sbjct: 524 ILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 401 PSIDTDPPGSRRPPAISTSNMTSP*RR*SSFEP 303
           P+I T PP ++ PP   TS+ T   R   ++ P
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAP 401


>Z47811-1|CAA87785.3|  201|Caenorhabditis elegans Hypothetical
           protein K02C4.2 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 226 FRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAG 363
           FRD ++  +E   GD D + +F++   +     R GE +F+ L  G
Sbjct: 99  FRDIMISTIEDKIGDFDESRQFMNKKAA-----RQGECVFECLYPG 139


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 458 IVSMSSLAEKMQVLVLGDSPSIDTDPPGSRRPPAISTSNMTSP 330
           +VS SS      V+    +PS    P  +   P  STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,678
Number of Sequences: 27780
Number of extensions: 233528
Number of successful extensions: 884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)