Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_M21
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 36 0.002
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 32 0.026
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.061
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 30 0.081
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 30 0.11
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 29 0.14
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 29 0.19
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 29 0.19
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 0.57
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 0.75
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 0.99
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 26 1.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 1.3
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.3
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 25 2.3
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 2.3
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 3.0
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 25 3.0
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 24 5.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 7.0
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 24 7.0
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 24 7.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 7.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 24 7.0
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 35.9 bits (79), Expect = 0.002
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = +2
Query: 155 NVRTGEIVRTLETENYVEELLAIEFPQNEDYNLVGCSTDGRITTWTWENGAV 310
N + EI R LE +EE AI + YNL S DG W WE G+V
Sbjct: 346 NAKADEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDG----WNWELGSV 393
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 31.9 bits (69), Expect = 0.026
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +2
Query: 53 LHKIAGRNIIERCPV-FSPDGESLALIVENIVRVYNVRTGEIVRTLETENYVEE----LL 217
LH + ++I C V FS DG+ LA V+NV TG+++ L+ E+ E +
Sbjct: 281 LHTLEHTSVI--CYVRFSADGKFLATGCNRAAMVFNVETGKLITLLQEESSKREGDLYVR 338
Query: 218 AIEFPQNEDYNLVGCSTDGRITTW 289
++ F + Y G D +I W
Sbjct: 339 SVAFSPDGKYLATGVE-DQQIRIW 361
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.061
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 101 SPDGESLALIVENIVRVYNVRTGEIVRTLETENYVEELLAIEFPQNEDYNLVGCSTDGRI 280
SPD + LA VR+Y++ T + + E + + AI F + + L S DG +
Sbjct: 49 SPDKKFLAAAGNPHVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKW-LATSSEDGTV 107
Query: 281 TTWTWENGAVLR 316
W +V R
Sbjct: 108 KVWDMRAPSVQR 119
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 30.3 bits (65), Expect = 0.081
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 41 IKYCLHKIAGRNI--IERCPVFSPDGESLALIVENIVRVYNVRTGEIVRTLETENYVEEL 214
I+YC+ KI I E C P L V+ +RV+N+ G+ + + + N E
Sbjct: 249 IEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETS 308
Query: 215 LAIE 226
+ I+
Sbjct: 309 ITID 312
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.9 bits (64), Expect = 0.11
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 140 IVRVYNVRTGEI-VRTLETENYVEELLAIEFPQNEDYNLVGCSTDGRITTWTWE 298
+VR+++ R G + T++T + ++ +EF + + L+ C+ D + W +E
Sbjct: 389 LVRIWDDRYGSAPLHTIKTSENITKINGLEFNRACETRLLTCAMDRTVKFWNYE 442
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.14
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 134 ENIVRVYNVRTGEIVRTL-ETENYVEELLAIEFPQNEDYNLVGCSTDGRITTW 289
++ ++ +NV TGE V TL +YV+ LL +E E+ L+ STD + W
Sbjct: 111 DHTIKKWNVSTGECVETLIGHTDYVKCLLLLE----EEGLLLSGSTDASLIVW 159
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.1 bits (62), Expect = 0.19
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 FSPDGESLAL-IVENIVRVYNVRTGEIVRTLETENYVEELLAIEFPQNEDYNLVGCSTDG 274
F+P LA + +R++NV T + V+TL E + +L + + ++ +V + DG
Sbjct: 515 FNPFSRQLASGSGDRTIRIWNVDTQQCVQTL--EGHTGAILKLIY-ISQGTQVVSAAADG 571
Query: 275 RITTWTWENGAVLRETNLH 331
+ W+ +G + + H
Sbjct: 572 LVKVWSLSSGECVATLDNH 590
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.19
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 221 IEFPQNEDYNLVGCSTDGRITTW 289
+ F + YNLV CS DG I W
Sbjct: 234 VNFCNDSPYNLVSCSRDGSIIFW 256
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 0.57
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +2
Query: 182 TLETENYVE--ELLAIEFPQNED 244
T+ETENYVE +L+ E PQ+E+
Sbjct: 510 TVETENYVENGKLVTSEMPQHEN 532
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 0.75
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 89 CPVFSPDGESLALIVENIVRVYNVRTG--EIVRTLETENY 202
C F+ DGE L +N + +N+RTG E V T T Y
Sbjct: 160 CLQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGY 199
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 0.99
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 98 FSPDGESLALIVENIVRVYNVRTGEIVRTLETENYVEELLAIEFPQNEDYNLVGCSTDGR 277
F P L + + VR+YN+ E+V+TL T V+ + ++ + D+ ++G S D R
Sbjct: 577 FHPTMPYLLVATQRYVRIYNLVKQELVKTLLTG--VKWVSSLSVHSSGDHVIIG-SYDKR 633
Query: 278 I 280
+
Sbjct: 634 L 634
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 251 LVGCSTDGRITTWTWENGA-VLRE 319
L C TD RI W E+G LRE
Sbjct: 261 LASCGTDDRIRVWNMESGRNTLRE 284
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 95 VFSPDGESLALIVENIVRVYNVR 163
VF+PDG S+ V N V VYN++
Sbjct: 21 VFTPDGFSILSPVGNRVSVYNLK 43
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 1.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 194 ENYVEELLAIEFPQNEDYNLVGCSTDGRITTWT 292
+NYV LL E D LV STDG+ + WT
Sbjct: 316 DNYVHRLLQSE----TDGKLVELSTDGKSSGWT 344
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 128 IVENIVRVYNVRTGEIVRTLETENYVEELLAIEFPQNE 241
++ NIV + E++R LE ++ +L+ +++P +E
Sbjct: 567 LMPNIVYIDETVEIEVLRALEKFGHIVDLIPVQYPFSE 604
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 154 VNSNDVFYDQCKRFAVWRKYGTSFNNISAS 65
V +D F+ + RF VW +G F AS
Sbjct: 216 VKISDTFFYRLPRFIVWNAFGRWFARAPAS 245
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 182 TLETENYVEELLAIEFPQNE-DYNLVGCSTDGRITTW 289
T+ + ++E + I + N N+V CSTDG + W
Sbjct: 284 TIISGGHLEPVTDITYINNPPSNNIVTCSTDGLVHIW 320
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 3.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 110 GESLALIVENIVRVYNVRTGEIVRTLETENYVEELLAIEFPQNEDYN 250
G +L L V+N V T V + T+NY LL EFP +N
Sbjct: 173 GNNLQLYVDNKPSKEIVSTYPNVYKMCTKNYYTRLLFPEFPNVYAFN 219
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 5.3
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 74 NIIERCPVFSPDGESLALIVENIVRVYNVRTGEIVRTLET-ENYVEELLAIEFPQNED 244
N++ C SP+ SLA E ++ V T + LE+ N EE A +F ED
Sbjct: 251 NVLRACLCVSPEKRSLAKTREAVLAVTKWTTDD--EELESFVNEEEEFRASDFMPAED 306
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 143 VRVYNVRTGEIVRTLETE-NYVEELL 217
VRVYN TGE V E +Y+ L+
Sbjct: 80 VRVYNYNTGEKVTQFEAHPDYIRALV 105
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 75 ILLNDVPYFLQTAN 116
I+LND Y++QTAN
Sbjct: 390 IVLNDYAYWIQTAN 403
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 23.8 bits (49), Expect = 7.0
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 251 LVGCSTDGRITTW 289
++ C+T+GRI TW
Sbjct: 528 MITCATNGRIRTW 540
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 143 VRVYNVRTGEIVRTLETENYVEELLAIEFPQN 238
V +Y++RT E++R E E A+ P N
Sbjct: 212 VVLYSIRTDEVIRFYELEYAPGSTAAVLSPHN 243
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 5 EVVVKINN--SNDSIKYCLHKIAGRNIIERCPVFSPDGESLALI 130
E+V K N S+DSI + G N+ +R F P G+++ L+
Sbjct: 71 ELVAKYLNASSSDSIAFTRDTTEGLNLFQRSMHFQP-GDNVVLL 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,303
Number of Sequences: 5004
Number of extensions: 25411
Number of successful extensions: 84
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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