Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_M20
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    39   3e-04
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   1.8  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   1.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.1  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   3.1  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   4.1  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   5.4  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   5.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   7.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.2  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   7.2  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.2  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 245 IRAAYEDVRSDASPTEWAVFKFE---GARIICSGRGSDFTEFRTQFSDDERAFGYLRLHM 415
           IR  YE V S A    WA+F +E   G  +     G+D  EF  +F ++   FG+LR+  
Sbjct: 14  IRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK- 72

Query: 416 GDEMSNRKKFMFV 454
            D  +   KF+ V
Sbjct: 73  -DVNTGLNKFVLV 84


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 450 NMNFLRFDISSPMCNLR*PNARSSSENCVR--NSVKSLPRPEHIIRAPSNLKTAHSVGEA 277
           N+N   F+  SP+ N    N   SS+N V   N+++S P P      P     + +V  +
Sbjct: 186 NLNTSSFNTRSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQIDSQNVKRS 245

Query: 276 SDLTSS 259
           ++  S+
Sbjct: 246 NNYLST 251


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 290 EWAVFKFEGARIICSGRGSDFTEFRTQFSDDERAF 394
           EW VF     R       +DF +FR+Q  DDE  F
Sbjct: 888 EWNVFAQYKRR---ESNATDFEDFRSQVGDDESKF 919


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 179  IPNPPTLLSQ**KITVICTVFYFYKFFGIFTSFKSHSISYFVYN 48
            + + P LLSQ      +C   YFY  F   +S KS S     YN
Sbjct: 1680 VEHMPNLLSQ----EALCAKLYFYTAFECMSSLKSDSHDTEEYN 1719


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -3

Query: 434 GSTSRRPCATSGNRMRVRHQRIAYGTL*SHFHVPSILYGHLRT*KQPIL*ERRQTSRPHT 255
           GS S RP  +S +R R +       T   +   PS+L G L    +     R + S  H 
Sbjct: 467 GSLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSGSLANSSEHSSSPRLRGSPIHN 526

Query: 254 PPVS 243
            PVS
Sbjct: 527 QPVS 530


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 381 SSENCVRNSVKSLPRPEHIIRAPSNL 304
           S  N  +N++ S+P P  +   PSNL
Sbjct: 522 SQANAPKNALHSMPSPTSLANLPSNL 547


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 293 WAVFKFEGARIICSGRGSDFTEFRTQFSDDERAFGYLRLHMGDEMS 430
           W++       ++C+G     T F ++   D++     R H+G+E S
Sbjct: 364 WSMQYHPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHHLGEEQS 409


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 217 RYFSWTILHNCFVFQTLRHCS 155
           +YF+ T LH  FVF  L  CS
Sbjct: 38  KYFTKTHLHRLFVFVVLLLCS 58


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 184 FVFQTLRHCSH--NNKKSQLYAQSFIFINFLVYLPV 83
           FV  TL+ C    +    + +   FIFI FLV++P+
Sbjct: 371 FVASTLQACVKVISTTHREYHLAVFIFIQFLVFVPL 406


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 202 TILHNCFVFQTLRHCS 155
           ++LHNC +F   R CS
Sbjct: 725 SLLHNCCIFYAYRACS 740


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 181 RNNCAEWSKKS-NDDHRYRPGYDTG 252
           RN+   W +++ ND +R+R  YD+G
Sbjct: 206 RNDRNNWRERTHNDRYRHRDKYDSG 230


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 260 EDVRSDASPTE----WAVFKFEGARIICSGRGSDFTEFRTQFSDDERAFGYLRLHMGD 421
           E V+SD S  +    W+ F+F         + S+F EF    SDD+    Y+ L+ G+
Sbjct: 461 EGVQSDGSAPKLHPLWSRFRFP--------KDSEFPEFFKCSSDDDNTHFYVNLYTGE 510


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 145 YYCESNVGGFGIRNNCAEWSKKSN 216
           +Y +S  GG+G R + ++W KK+N
Sbjct: 117 FYDKSKFGGYGDRGDESQW-KKAN 139


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 393 NARSSSENCVRNSVKSLPRPEHIIRAPSNLKTAHSVGEASDL 268
           N  S SENC   S  +LPR + I R  ++L  + +  EA+ L
Sbjct: 95  NRESMSENCFSKSSTNLPRLD-INRDFNSLLNSQTKPEATGL 135


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -2

Query: 378 SENCVRNSVKS-LPRPEHIIRAPSNLKTAHSVGEASDLTSSYAAXXXXXXXXXXXVTFLG 202
           S + +R   K+ +P+    + A  NL+ A+SV  ASD  SS               T LG
Sbjct: 4   SRSILRGMPKAGIPKSPLALSASRNLRLANSVRFASDAASS--PKSTTSKWKILKRTTLG 61

Query: 201 PFCTIV 184
            F T V
Sbjct: 62  LFATAV 67


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 178 FQTLRHCSHNNKKSQLYAQSFI 113
           F+  +HCS+ NK+S L  + FI
Sbjct: 559 FRWSQHCSNFNKESMLSLREFI 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,817
Number of Sequences: 5004
Number of extensions: 43910
Number of successful extensions: 111
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)